Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0509.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     34   0.096
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       30   1.6  
SB_50557| Best HMM Match : Kinesin (HMM E-Value=9.6e-24)               29   4.8  
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)                29   4.8  
SB_53560| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_38620| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_35012| Best HMM Match : Phosphodiest (HMM E-Value=0)                28   8.4  
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +3

Query: 252 GVNNDDFKFKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKL 431
           G + +D   KR+NS+ +K+ + K +DK  KD  +++E   K  +   +QF  +  E   L
Sbjct: 381 GPSAEDVSTKRKNSL-DKRAAAKKMDKQLKDATKNLELEKKKYEKVKEQFTTTEQELKDL 439

Query: 432 VEQLQAV 452
            ++  A+
Sbjct: 440 KKEHDAL 446


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 234 IDNHSGGVNNDDFKFKRENSVVEKKLST-KPIDK-YCKD--IIQDIEKSSKVIDSHVKQF 401
           I N   G      KFK   + ++KK +  K  +K Y KD      IEKS   I+  +K+ 
Sbjct: 250 ISNAETGAKQAQLKFKHSQAELKKKRAELKATEKGYEKDKQAFDAIEKSKAKIEGEMKKL 309

Query: 402 NNSRFESDKLVEQ 440
           N    + +KLV +
Sbjct: 310 NYEDGKEEKLVSR 322


>SB_50557| Best HMM Match : Kinesin (HMM E-Value=9.6e-24)
          Length = 547

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -1

Query: 689 LTKYCISFLSPVNHLINPGGSNSNLQADYS*NFFSLTQIVFS 564
           LTK+ ++ ++ V +LI  G  N ++ +  S NFFS +  +F+
Sbjct: 161 LTKHIVTEVTEVLNLIEKGKKNRSVCSRSSDNFFSSSHTIFT 202


>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
          Length = 560

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 488 NTRRNFKELNNNFKVLTDQVLDTAPTRK 571
           NTR   K LNNN  V     +DTAP  K
Sbjct: 17  NTRNGGKPLNNNGNVADAMPIDTAPPAK 44


>SB_53560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 255 VNNDDFKFKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHV-KQFNNS 410
           +NN   KF++    ++++ S  P+ + C+ ++    K  +   +H+ K+F NS
Sbjct: 132 INNGKTKFRKSCRKMDREPSRLPVKRICR-LLNMSRKIRRTFRNHIAKEFQNS 183


>SB_38620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 348 IQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNE 467
           IQ + +  +V  +H++  N   F   KL  + +A  KLNE
Sbjct: 409 IQALNEKGRVTCNHIQALNEKAFLQKKLKREKKAKRKLNE 448


>SB_35012| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 412

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 333 YCKDIIQDIEKSSKVIDSHVKQFNNSRFE 419
           YCKD   D+EK+ K     VK  +N RFE
Sbjct: 385 YCKDYT-DVEKNQKYCYKKVKSPDNLRFE 412


>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1531

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 273  KFKRENSVVEKKLST-KPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQA 449
            K +   + +EKK S  K +    +++ QD++ SS  I    +    +R ++D+   QLQ 
Sbjct: 827  KLQEARAELEKKTSELKELSSTMREMHQDMKTSSASIVELEQLLQEARTQNDRHSVQLQT 886

Query: 450  VDKLNELVNFKGEIPEETLKN 512
             D  +     K  + ++T +N
Sbjct: 887  TD--HAYKETKASLSQQTKRN 905


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,615,069
Number of Sequences: 59808
Number of extensions: 268527
Number of successful extensions: 730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)