Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0509.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03660.1 68418.m00325 expressed protein low similarity to out...    31   0.97 
At5g34540.1 68418.m04035 hypothetical protein                          29   3.0  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    28   5.2  
At5g39500.1 68418.m04783 pattern formation protein, putative sim...    27   9.0  
At1g58330.1 68414.m06635 transcription factor-related low simila...    27   9.0  
At1g08070.1 68414.m00883 pentatricopeptide (PPR) repeat-containi...    27   9.0  

>At5g03660.1 68418.m00325 expressed protein low similarity to outer
           surface protein F [Borrelia burgdorferi] GI:466482;
           contains Pfam profile PF04949: Family of unknown
           function (DUF662)
          Length = 173

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +3

Query: 279 KRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDK 458
           ++E ++V KK+ +  +DK  K +   ++K        ++ FN    E  +L+ +LQ ++ 
Sbjct: 94  RKEVTMVRKKIDS--LDKELKPLGNTVQKKETEYKDALEAFNEKNKEKVELITKLQELEG 151

Query: 459 LNELVNFK 482
            +E   FK
Sbjct: 152 ESEKFRFK 159


>At5g34540.1 68418.m04035 hypothetical protein
          Length = 260

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
 Frame = +3

Query: 240 NHSGGVNNDDFKF-----KRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFN 404
           NHSG V    FK+      R   VVE  L++K  +K  + +  DI+ S     + V+ + 
Sbjct: 85  NHSGSVKYI-FKYIHKEPDRVTVVVESSLNSKNKEKGKQKVNADIDGSEPKKKNEVEDYF 143

Query: 405 NSRFESDKLVEQLQAVDKLNELVNFKGEIPEETLKN 512
           N R  S  +++ L  + +  + + FKG+   ET+ N
Sbjct: 144 NCR--STPMMKLLFHLPR-EQFIYFKGDDQVETMLN 176


>At3g22790.1 68416.m02873 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1694

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +3

Query: 312  STKPIDKYCKDIIQDIEK--SSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNELVNFKG 485
            S + I+   K  ++ +E+    K +DS   Q  NS+ E  KL E L+  ++LN+L+  + 
Sbjct: 1101 SLQNINSGLKQKVETLEEILKGKEVDS---QELNSKLE--KLQESLEEANELNDLLEHQI 1155

Query: 486  EIPEETLK 509
             + EETL+
Sbjct: 1156 LVKEETLR 1163


>At5g39500.1 68418.m04783 pattern formation protein, putative similar
            to SP|Q42510 Pattern formation protein EMB30 {Arabidopsis
            thaliana}; contains Pfam profile PF01369: Sec7 domain
          Length = 1443

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 306  KLSTKPIDKYCKDIIQDIEKSSKVIDSHVK 395
            KL  K  D YC+ I Q++ +  K   SHV+
Sbjct: 1101 KLKAKVADAYCERIAQEVVRLVKANASHVR 1130


>At1g58330.1 68414.m06635 transcription factor-related low
           similarity to tumor-related protein [Nicotiana glauca x
           Nicotiana langsdorffii] GI:688423, ocs-element binding
           factor 4 [Arabidopsis thaliana] GI:414613, mas-binding
           factor MBF3 [Solanum tuberosum] GI:13195751; supporting
           cDNA gi|6520153|dbj|AB028196.1|
          Length = 225

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 19  EMQKRMEAMKIELINKIKNNDE 84
           EM+  ME +K+E+I  +KN D+
Sbjct: 167 EMEDAMEVLKVEMIKAMKNADQ 188


>At1g08070.1 68414.m00883 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 741

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 142 PRLILQ*ISFLKHSLFLGPVHRYSLFC*LIQFS*LPYVFAFPLVWNS 2
           P L++    F  H+L   PV    L+  +I    LP  + FP V  S
Sbjct: 97  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,919,098
Number of Sequences: 28952
Number of extensions: 197515
Number of successful extensions: 562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)