Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0508.Seq
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   2.2  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   2.2  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    23   9.0  

>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 APT*QYFAQVCNGFIHFVIIFFCHLNLN 283
           APT   ++QV N  I+F  I  C+  +N
Sbjct: 570 APTKYVYSQVLNKLIYFFTIAICYACIN 597


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 212  QYFAQVCNGFIHFVIIFFCHLNLNY 286
            ++++ + NGF H +++F C + + Y
Sbjct: 1048 RFWSWITNGFYHSLLLFLCSIAVFY 1072


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 63  PAQHLLRYTSI*IKQC 110
           P QH+LR+++   KQC
Sbjct: 38  PLQHILRFSNFASKQC 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 874,959
Number of Sequences: 5004
Number of extensions: 10889
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)