Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0508.Seq
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer ...    28   1.4  
U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer ...    28   1.4  
AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform...    28   1.4  
Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform b protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 83  IYVYLNQTMSLTRYRXGPPPHSRGVGGGDPIV 178
           IY+ ++  + +TRY  GPPP    V G  P V
Sbjct: 79  IYIIISYFIRITRYPPGPPP--MAVFGNSPFV 108


>U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform a protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 83  IYVYLNQTMSLTRYRXGPPPHSRGVGGGDPIV 178
           IY+ ++  + +TRY  GPPP    V G  P V
Sbjct: 94  IYIIISYFIRITRYPPGPPP--MAVFGNSPFV 123


>AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform A
           protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 83  IYVYLNQTMSLTRYRXGPPPHSRGVGGGDPIV 178
           IY+ ++  + +TRY  GPPP    V G  P V
Sbjct: 79  IYIIISYFIRITRYPPGPPP--MAVFGNSPFV 108


>Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical
           protein K10G4.2 protein.
          Length = 303

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 218 FAQVCNGFIHFVIIFF 265
           F  V NG IHF+I++F
Sbjct: 249 FLSVINGAIHFLIVYF 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,119,275
Number of Sequences: 27780
Number of extensions: 69699
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)