Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0508.Seq
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05890.1 68415.m00638 hypothetical protein includes At2g05890...    26   5.3  
At4g07450.1 68417.m01143 hypothetical protein includes At2g05890...    26   7.0  
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    26   7.0  
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...    25   9.3  
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein...    25   9.3  

>At2g05890.1 68415.m00638 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 456

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 212 QYFAQVCNGFIHFVIIFFC-HLNL 280
           +++ ++CNGF   V+  FC HL++
Sbjct: 306 RFWCEICNGFAKSVVAKFCLHLHI 329


>At4g07450.1 68417.m01143 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 439

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/24 (33%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 212 QYFAQVCNGFIHFVII-FFCHLNL 280
           +++ ++CNGF  +V+  F+ HL++
Sbjct: 255 RFWCEICNGFAKYVVAKFWLHLHI 278


>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 134 PPPHSRGVGGGDP 172
           PPPH  G GGG P
Sbjct: 53  PPPHHGGKGGGKP 65


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 89  VYLNQTM-SLTRYRXGPPPHSRGVGGGDP 172
           VY + T  S T    GP P S G+GGG P
Sbjct: 436 VYSDPTWRSPTPETEGPAPFSYGIGGGVP 464


>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 494

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 89  VYLNQTM-SLTRYRXGPPPHSRGVGGGDP 172
           VY + T  S T    GP P S G+GGG P
Sbjct: 436 VYSDPTWRSPTPETEGPAPFSYGIGGGVP 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,745,802
Number of Sequences: 28952
Number of extensions: 60597
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)