Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0505.Seq
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0408 + 17352110-17352619,17352709-17352834,17353036-173532... 87 8e-18
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 79 2e-15
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 62 2e-10
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968 38 0.008
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 34 0.099
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 33 0.17
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 33 0.23
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495 30 1.2
02_01_0529 - 3846489-3847268 30 1.2
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 30 1.2
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 30 1.6
09_06_0360 - 22510132-22510433,22510577-22510716,22510979-225110... 29 3.7
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 29 3.7
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 28 4.9
12_01_0079 + 644754-645932,645966-646061,646193-647122 28 6.5
11_01_0078 + 609005-610183,610217-610312,610444-611373 28 6.5
05_01_0126 + 858259-858489,858641-859189,859545-860162 28 6.5
04_02_0011 - 8513471-8513673,8513815-8513869 27 8.6
>09_04_0408 +
17352110-17352619,17352709-17352834,17353036-17353209,
17353669-17353830,17353998-17354140,17354835-17354910,
17355445-17355589,17355847-17355896,17356001-17356078,
17357153-17357314,17357406-17357669,17357929-17358033,
17358158-17358247,17358344-17358346
Length = 695
Score = 87.4 bits (207), Expect = 8e-18
Identities = 38/66 (57%), Positives = 47/66 (71%)
Frame = +1
Query: 256 PLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISE 435
PLK+ PD+P + Y P+ C CR+ILNP VDY AK+WVC FCFQRN FP Y++ISE
Sbjct: 40 PLKQVPDIPVLPYSPLRC--RMCRSILNPFSIVDYVAKIWVCPFCFQRNHFPQHYSSISE 97
Query: 436 QHQPAE 453
+ PAE
Sbjct: 98 SNLPAE 103
Score = 50.0 bits (114), Expect = 1e-06
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +2
Query: 161 EDRDGIRFTWNVWPSSRIEATRLVVPLACLYHRLRSAPTYHRYSTSLYSVHEIHAELY*T 340
E +DGIR WNV P +R +A VVP++ +Y L+ P S + L
Sbjct: 8 EAQDGIRMPWNVIPGTREDALSCVVPISAIYTPLKQVPDIPVLPYSPLRCRMCRSILNPF 67
Query: 341 QCARWITELNYGSATFASNETHFHLNMLLYQNSINLQKLIPNFSTIEYTINA-SNRLGPK 517
++ ++ F HF + S +L P ++T+EY A + + P
Sbjct: 68 SIVDYVAKI--WVCPFCFQRNHFPQHYSSISESNLPAELFPQYTTVEYISTAETGPVVPP 125
Query: 518 STCLFVDTWLDEEELWGTSKDSLCRL 595
VDT + EEE+ G K +L ++
Sbjct: 126 VFMFVVDTCMIEEEI-GYLKSALAQV 150
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 79.4 bits (187), Expect = 2e-15
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 280 PPIQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAE 453
PP+ Y P+ C + C A+LNP +VD+ AK+W+C CF RN FPP YAAISE + PAE
Sbjct: 58 PPLPYPPLRC-KPPCSALLNPFARVDFAAKIWICPLCFSRNHFPPHYAAISESNVPAE 114
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +2
Query: 170 DGIRFTWNVWPSSRIEATRLVVPLACLYHRLRS 268
D +R TWN WP S++EA+R VVPLA +RS
Sbjct: 19 DAVRLTWNAWPRSKVEASRCVVPLAAAISPVRS 51
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 62.5 bits (145), Expect = 2e-10
Identities = 31/66 (46%), Positives = 40/66 (60%)
Frame = +1
Query: 256 PLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISE 435
PL+ P +P + Y P+ C CR+ILNP C VDY AK+W RN FP Y++ISE
Sbjct: 180 PLRPNPAIPVLPYGPLRC--RMCRSILNPFCVVDYVAKIW-------RNHFPQHYSSISE 230
Query: 436 QHQPAE 453
+ PAE
Sbjct: 231 SNLPAE 236
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 170 DGIRFTWNVWPSSRIEATRLVVPLACLYHRLRSAP 274
DGIR WNV P ++ +A VVP++ +Y LR P
Sbjct: 151 DGIRMPWNVIPGTKQDAANCVVPVSAIYTPLRPNP 185
>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
Length = 800
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +1
Query: 244 LLVPPLKERPDLPPI-QYEPVLCTRNT----CRAILNPMCQVDYRAKLWVCNFC-FQRNP 405
L P PDL P+ Y P+ C C A LNP +V + W C FC NP
Sbjct: 36 LCTPLHPAAPDLLPLLPYAPLRCGGGGGGGGCGAALNPFSRVHHATARWACPFCGASANP 95
Query: 406 FP 411
FP
Sbjct: 96 FP 97
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 170 DGIRFTWNVWPSSRIEATRLVVPLACLYHRLRSA 271
+G+R+ W+ WP + A LVVP + L L A
Sbjct: 10 EGLRWPWHAWPPTASAAASLVVPTSVLCTPLHPA 43
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 33.9 bits (74), Expect = 0.099
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 298 PVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQY 420
P+ C+R C+A +NP + + K +VCN C N P +Y
Sbjct: 427 PIRCSR--CKAYINPFMRFIDQGKHFVCNLCGFSNDTPREY 465
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 307 CTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQP 447
CT N+ A P +D K+ VCNFCF++ + + AA ++Q P
Sbjct: 69 CTTNSIPASSGPDRNIDEGDKIRVCNFCFKQ--WEQERAAANKQMMP 113
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 298 PVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQY 420
P+ C+R C+A +NP + + + ++CN C N P +Y
Sbjct: 145 PIRCSR--CKAYINPFMRFVDQGRRFICNLCGFSNDTPREY 183
>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
Length = 728
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 136 CGHIADQKVMRRTSYKHMSKFLKSQYVFIQKSHKFL 29
C H+ D ++ TS KH L +++ ++ KFL
Sbjct: 653 CSHLDDGRISSMTSVKHEISLLNTRFTALETDQKFL 688
>02_01_0529 - 3846489-3847268
Length = 259
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 403 PFPPQYAAISEQHQPAETDS*LFHHRVHNKREQQAR 510
PFP A +S QHQ + FH ++ +++QQ R
Sbjct: 50 PFPTNPAQLSAQHQLVYQQAQQFHQQLQQQQQQQLR 85
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 238 FGLLVPPLKE-RPDLPPIQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPP 414
FG LV P +E P ++ +P C C A +N C V + W C C + N
Sbjct: 165 FGALVSPGREVAPGPETVERDPRRCLN--CGAYVNLYCDVLIGSGQWQCVICKKMNGSEG 222
Query: 415 QYAAISEQH 441
++ +S +H
Sbjct: 223 EF-VVSSKH 230
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 301 VLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQY 420
+ C R CR +NP + W CN C N P +Y
Sbjct: 354 IRCRR--CRTYINPYATFADAGRKWRCNLCTLLNDVPGEY 391
>09_06_0360 -
22510132-22510433,22510577-22510716,22510979-22511049,
22511152-22511352,22511541-22511786,22512148-22512209,
22512314-22512620
Length = 442
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +2
Query: 152 QQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYHR----LRSAPTYHRYSTSLYSVHEI 319
++ ED +G F W W + + P LY++ L SAPT S + EI
Sbjct: 57 EEEEDDEGKAFPWRRWRPDVAWLPKALEPALQLYNQYKPFLTSAPT-DNIPASTRTFSEI 115
Query: 320 HAELY*TQCARWITELNYGSATFASNETHFHLNMLLYQNSI 442
++L ++ + I L + N T + +L + ++
Sbjct: 116 LSDLQRSKVQQLIYHLELARGCYKGNATGLARHSMLRKRNV 156
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 68 FKKFAHVFITGSPHDFLIGDM----ATYEEFIQQNEDRD 172
FK A+VF+ G P+D GD+ A Y E + N RD
Sbjct: 32 FKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRD 70
>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 143 EFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYHRLRSAPTYHRYSTSL 301
E ++ E DG+ W VW +IE R VPL + SAP +TSL
Sbjct: 1164 EVVRMLEGGDGLAQRWEVW--WKIEVVRQEVPLTSSFS--LSAPNSFANNTSL 1212
>12_01_0079 + 644754-645932,645966-646061,646193-647122
Length = 734
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 578 LWKSPKVLPHLTKYQQTSR*IWGLACCSRLLCTLWW 471
LW ++LP +++ TS LAC S LL TL+W
Sbjct: 12 LWALSQLLPAAYRFEVTSP---RLACVSVLLLTLFW 44
>11_01_0078 + 609005-610183,610217-610312,610444-611373
Length = 734
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 578 LWKSPKVLPHLTKYQQTSR*IWGLACCSRLLCTLWW 471
LW ++LP +++ TS LAC S LL TL+W
Sbjct: 12 LWALSQLLPAAYRFEVTSP---RLACVSVLLLTLFW 44
>05_01_0126 + 858259-858489,858641-859189,859545-860162
Length = 465
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 575 WKSPKVLPHLTKYQQTSR*IWGLACCSRLLC 483
W P P + T R W + CC RLLC
Sbjct: 300 WDQPPPPPCCSGCGTTHRVEWVMTCCHRLLC 330
>04_02_0011 - 8513471-8513673,8513815-8513869
Length = 85
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Frame = +1
Query: 283 PIQYEPVLCTRNTCRAILNPMCQVDYRAK--------LWVCNFCFQRNPFP 411
PI P C TC+AI C Y++K L+ CNFC P P
Sbjct: 34 PITEVPKPCVDATCKAI----CSDKYQSKGECFSTDGLYYCNFCANSPPLP 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,662,349
Number of Sequences: 37544
Number of extensions: 387000
Number of successful extensions: 838
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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