Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0505.Seq
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.057
SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)                    30   1.6  
SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         28   6.6  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     27   8.7  
SB_14661| Best HMM Match : EMI (HMM E-Value=0.8)                       27   8.7  

>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 25/93 (26%), Positives = 40/93 (43%)
 Frame = -1

Query: 300  RLVLYRW*VGALLKRWYKQAKGTTSLVASILLDGHTFQVNRMPSRSSFCWMNSSYVAISP 121
            R V+Y       +K+W   AKG T   A+  L  H F+      R    +   ++V++  
Sbjct: 845  RFVIYHLDAPGQVKKWQLNAKGFTEGTAN-YLKWHHFERVGGEKRKDIMYTRLAHVSVIA 903

Query: 120  IKKSCGEPVINT*ANFLNHNMSSFKNPINFSIF 22
            + +  G+P I    NF +  M    NP N + F
Sbjct: 904  LLQKTGKPNIELMENFCD-EMKKNINPHNLAAF 935


>SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)
          Length = 1466

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +2

Query: 305  SVHEIHAE---LY*-TQCARWITELNYGSATFASNETHFHLNMLLYQNSINLQKLIPNFS 472
            +VH IHAE   LY   Q    +  +  G     S+   F  ++ L+++  NL+ L+PN  
Sbjct: 914  NVHNIHAEIGNLYDFIQNLSHLKIVGKGQQFHLSDNVDFKYDLSLFKSLSNLESLLPNIE 973

Query: 473  TIEYTIN 493
            ++ ++ N
Sbjct: 974  SLNWSHN 980


>SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 389 ASNETHFHLNMLLYQNSINLQKLIPNFS-TIEYTINASNRLGPKSTCLFVDT 541
           A N+T  H+N+ + +N+  +  L P+    IE +       GPKS  +FV T
Sbjct: 122 AGNDTTLHVNVTIDRNTSVITDLQPSTEYRIEVSAFTGGGYGPKSAPIFVFT 173


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 353  WITELNYGSATFASNETHFHLNMLLYQNSINLQKLIPNFSTIEYTINASNRLGPKSTCLF 532
            W+ ++  GSA  +  + H  L   +YQ+  +  K +     +E T   S  +G   T LF
Sbjct: 1956 WLVDMTEGSAVASLEQCHSSLQQCVYQHRRDADKTV--LIQVEQTETCSIAIG-SLTALF 2012

Query: 533  V 535
            V
Sbjct: 2013 V 2013


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 89   FITGSPHDFLIGDMATYEEFIQQNEDRDGIRF 184
            F T  P D  +GD   +  FI  N +RDG  F
Sbjct: 991  FETSQPADSKVGDADDFGNFIGDNGNRDGKDF 1022


>SB_14661| Best HMM Match : EMI (HMM E-Value=0.8)
          Length = 143

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 223 EACCAFGLLVPPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDY--RAKLWVCNFCFQ 396
           +  C  G L    +++P  PP +   +L   + C  +LNP C   +  R+ L +C   F 
Sbjct: 38  DRACLKGYL--QFQDQPSPPPRKQYQILQGPHVCGGLLNPSCCPGWQQRSSLGLCVVHFM 95

Query: 397 RNPFPPQ 417
            N   P+
Sbjct: 96  DNYSDPK 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,212,118
Number of Sequences: 59808
Number of extensions: 435242
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)