Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0505.Seq
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...   102   2e-22
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score =  102 bits (244), Expect = 2e-22
 Identities = 42/70 (60%), Positives = 54/70 (77%), Gaps = 4/70 (5%)
 Frame = +1

Query: 256 PLKERPDL----PPIQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYA 423
           PLKERP      PP++Y+PVLC + +C+AILNP+C VDYRAK+W+C FC  RNPFP  YA
Sbjct: 44  PLKERPSTEVAQPPLEYDPVLCQKASCKAILNPLCAVDYRAKIWMCPFCNNRNPFPAHYA 103

Query: 424 AISEQHQPAE 453
           AI+E ++P E
Sbjct: 104 AIAEDNRPPE 113



 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
 Frame = +2

Query: 128 MATYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYHRLRSAPTYHRYSTSLYS 307
           MAT+EE++   +  DG++FTWN+WP SR+++ +LVVPL C +  L+  P+       L  
Sbjct: 1   MATWEEYLGAQQANDGVQFTWNMWPHSRVDSQKLVVPLTCFFTPLKERPSTEVAQPPLEY 60

Query: 308 VHEIHAELY*TQCARWITELNYGS----ATFASNETHFHLNMLLYQNSINLQKLIPNFST 475
              +  +         +  ++Y +      F +N   F  +           +L P F+T
Sbjct: 61  DPVLCQKASCKAILNPLCAVDYRAKIWMCPFCNNRNPFPAHYAAIAEDNRPPELYPQFTT 120

Query: 476 IEYTINASNRLGPKSTCLFVDTWLDEEEL 562
           IEYT+  +  + P      VDT +  EEL
Sbjct: 121 IEYTLRKATTM-PPIFVFVVDTCMTAEEL 148


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 238 FGLLVPPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQV-DYRAKLWVCNFCFQRNPFPP 414
           F + + P ++  +L  IQ   ++  R  CR  +NP   + D+R   W CN C + N  P 
Sbjct: 309 FAITLHPFRDVKNLNIIQTSNIVRCRY-CRTYINPYVYLPDHRH--WKCNLCNRNNDLPD 365

Query: 415 QY 420
            +
Sbjct: 366 DF 367


>Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical
           protein D2089.3 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +1

Query: 253 PPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCF-----QRNPFPPQ 417
           PP ++R   P +    VL T   C A   P+C  D  +  +  NFC      +R  FPPQ
Sbjct: 198 PPSRDRAKKPCLNDFLVLGT--PCSACNQPVCMSDACSLFFGANFCAPCVSRERRRFPPQ 255


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
           protein C06B8.7 protein.
          Length = 3118

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
 Frame = +2

Query: 410 HLNMLLYQNSINLQKLIPNFSTIEYTINASNRLGP------KSTCLFVDTW 544
           H+ ML YQ  IN    +PNF  ++       RL        +S C  V  W
Sbjct: 108 HIEMLPYQQQINYDSEMPNFRLVDGPTVRQGRLQVQFRDRWRSVCTMVTNW 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,479
Number of Sequences: 27780
Number of extensions: 335011
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)