Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0505.Seq
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.0  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   5.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   5.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   5.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   5.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   6.9  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 247 LVPPLKERPDLPPIQYEPVLCTRNTCRAILNPM 345
           LV P  + PD  P     +      C ++LNP+
Sbjct: 393 LVRPFLKNPDAIPAFLSSLFLWLGYCNSLLNPI 425


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 255 WYKQAKGTTSLVASILLDGHTFQVN 181
           W K  +G  +   + ++DGH   +N
Sbjct: 70  WNKIPEGANTTSTTKIIDGHVVTIN 94


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 255 WYKQAKGTTSLVASILLDGHTFQVN 181
           W K  +G  +   + ++DGH   +N
Sbjct: 118 WNKIPEGANTTSTTKIIDGHVVTIN 142


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 255 WYKQAKGTTSLVASILLDGHTFQVN 181
           W K  +G  +   + ++DGH   +N
Sbjct: 118 WNKIPEGANTTSTTKIIDGHVVTIN 142


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 255 WYKQAKGTTSLVASILLDGHTFQVN 181
           W K  +G  +   + ++DGH   +N
Sbjct: 118 WNKIPEGANTTSTTKIIDGHVVAIN 142


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 383 TFASNETHFHLNMLLYQNSINLQKL 457
           T  +N  + + N  LY N IN++++
Sbjct: 322 TIHNNNNYKNYNKKLYYNIINIEQI 346


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 472 HHRVHNKREQQAR 510
           +HR H+K EQQ +
Sbjct: 55  YHRQHSKNEQQRK 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,167
Number of Sequences: 438
Number of extensions: 3944
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)