Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0504.Seq
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0) 107 4e-24
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28) 107 4e-24
SB_54973| Best HMM Match : RVP (HMM E-Value=2.6) 30 0.95
SB_17353| Best HMM Match : Transposase_11 (HMM E-Value=1.3) 29 2.9
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17) 28 5.1
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 5.1
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21) 28 5.1
SB_33142| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13) 27 6.7
SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 27 8.9
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
Length = 278
Score = 107 bits (258), Expect = 4e-24
Identities = 47/84 (55%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 HDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFG 438
HDP W+ EQ + A F G IG+ E+D M ++ I IFEI+E+AWA D AL+DMKIEFG
Sbjct: 134 HDPFWTYEQCVEAAFEIGGRKIGKHELDIMSESAIAIFEIIERAWATVDVALVDMKIEFG 193
Query: 439 VDTE-GSIVLADVIDSDSWRLWPS 507
V+ + G ++LADV+D+DSWR+WPS
Sbjct: 194 VNRKTGELMLADVVDNDSWRIWPS 217
Score = 86.2 bits (204), Expect = 1e-17
Identities = 42/64 (65%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Frame = +2
Query: 68 GIKTAFVKIASET--AFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETF 241
G+KT FVK AF+ CEMIP+E V RR+ATGSFLKR PGV EG+RFTPPKQE F
Sbjct: 68 GLKTHFVKRCESDPEAFIGIACEMIPLEVVCRRIATGSFLKRYPGVKEGYRFTPPKQEFF 127
Query: 242 FKDD 253
KDD
Sbjct: 128 LKDD 131
>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
Length = 265
Score = 107 bits (258), Expect = 4e-24
Identities = 47/84 (55%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 HDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFG 438
HDP W+ EQ + A F G IG+ E+D M ++ I IFEI+E+AWA D AL+DMKIEFG
Sbjct: 44 HDPFWTYEQCVEAAFEIGGRKIGKHELDIMSESAIAIFEIIERAWATVDVALVDMKIEFG 103
Query: 439 VDTE-GSIVLADVIDSDSWRLWPS 507
V+ + G ++LADV+D+DSWR+WPS
Sbjct: 104 VNRKTGELMLADVVDNDSWRIWPS 127
Score = 71.7 bits (168), Expect = 3e-13
Identities = 32/41 (78%), Positives = 35/41 (85%)
Frame = +2
Query: 131 MIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFFKDD 253
MIP+E V RR+ATGSFLKR PGV EG+RFTPPKQE F KDD
Sbjct: 1 MIPLEVVCRRIATGSFLKRYPGVKEGYRFTPPKQEFFLKDD 41
>SB_54973| Best HMM Match : RVP (HMM E-Value=2.6)
Length = 255
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 188 NPGVPEGFRFTPPKQETFFKDDETTIPNGQRSKSFQPNSIITXF 319
NP + RF P ++ TFF D+ + G K F P ++ F
Sbjct: 53 NPNLDNNDRFRPVRR-TFFSDEAIQVNEGPPRKCFPPTEVMFNF 95
>SB_17353| Best HMM Match : Transposase_11 (HMM E-Value=1.3)
Length = 200
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 277 LTIGDRGFVILEERLLFWRSEPEAFWYTR 191
L + DRGF I E L+F+R+EP +TR
Sbjct: 109 LVMADRGFTI-NESLMFYRAEPAIPAFTR 136
>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 188 NPGVPEGFRFTPPKQETFFKDDETTIPNGQRSKSFQPNSII 310
NP + RF P + TFF D+ + G K F P ++
Sbjct: 319 NPNLDNNDRFRPVSR-TFFSDEVIQVDEGPPRKCFPPTEVM 358
>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
Length = 1084
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 19 PCSDECLEPYKYNHHF 66
PC +E PYK N HF
Sbjct: 845 PCKEEACAPYKQNEHF 860
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 379 LEKAWALRDCALIDMKIEFGVDTEGSIVLADVIDSDSWRLWP 504
+++AW + D+K FGVD +G ++ D ++ SW P
Sbjct: 111 VQRAWQNCNRDTSDVKFTFGVDDDGMVI--DDVELPSWANTP 150
>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
Length = 491
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 479 SMTSANTMLPSVSTPNSIFMSISAQ 405
S+TS M+P V P +++MS++A+
Sbjct: 183 SLTSGGAMMPVVVLPTNVYMSLAAK 207
>SB_33142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 273 PLGIVVSSSLKNVSCFGGVNLKPSGTPGFLFRKEPVARR 157
P G VVS N C GG L+ GT F E +ARR
Sbjct: 209 PKGTVVSIGTGN-KCIGGDQLRLEGTVVFDSHAEVIARR 246
>SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)
Length = 609
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = -3
Query: 485 SESMTSANTMLPSVSTPNSIFMSISAQSRRAQAFSKI 375
S++MTS+NT PS+++ N+ SI++ + A S++
Sbjct: 323 SQNMTSSNTTSPSMTSVNTTATSITSTNSTLIADSQV 359
>SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 271 IGDRGFVILEERLLFWRSEPEAFWYTRISF*ERASCKAAGNPFNGDHLT 125
+G+RG + L + EA Y ER C + G P NG H+T
Sbjct: 99 LGERGLALPLGALKVALPKIEAL-YICCDIVERTQCLSLGEPSNGTHMT 146
>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +1
Query: 196 CTRRLQVHSSKTRDVL--QG*RNHDPQWSEEQIISAKFNYNGL---LIGRDEVDYMRKAT 360
C +L+V S+T+ + QG RN+ P E +++ + + L G ++
Sbjct: 298 CAAQLRVLVSQTQLTINSQGFRNYGPITLEHLLVALRRHVTTSECDLFGYQSIEGDVVVL 357
Query: 361 ILIFEILEKAWALRDCALIDMKIEFGVDTEGSIVLADVI 477
I+ + + C+L KIE ++TE +DV+
Sbjct: 358 IMAVTLKPTMLQIEACSLEAQKIEASINTESPSFTSDVL 396
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 246 LKNVSCFGGVNLKPSGTPGFL---FRKEPVARRRVTHSMGIISH 124
L N CF G++L P+G+P + +R + +A+ T G+ +H
Sbjct: 1029 LINAGCFTGIDLCPNGSPSSVQPYYRSQSLAKVTATFH-GLATH 1071
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 212 RFTPPKQETFFKDDETTIPNGQRSKSFQPNSIITXF*SVATRS 340
+ TP KQET + T +P S ++Q N+ F + A+ S
Sbjct: 30 KMTPSKQETREEQKTTAVPTTMDSSAYQCNNCSKAFDNSASLS 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,979
Number of Sequences: 59808
Number of extensions: 324894
Number of successful extensions: 629
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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