Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0504.Seq
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...   114   3e-26
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        29   1.9  
U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    29   2.6  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      29   2.6  
AJ505020-1|CAD43602.1|  382|Caenorhabditis elegans alpha-1->3-fu...    28   3.4  
AC006674-5|AAF39933.2|  382|Caenorhabditis elegans Fucosyl trans...    28   3.4  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   4.5  
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    27   7.8  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score =  114 bits (275), Expect = 3e-26
 Identities = 51/83 (61%), Positives = 63/83 (75%)
 Frame = +1

Query: 256 NHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEF 435
           N DPQW++EQI+S     + L IGR+E+  M+K T L+F  LEK WAL + ALIDMKIEF
Sbjct: 139 NDDPQWTDEQIVSNGLMIDHLKIGREEISLMKKMTKLVFRALEKGWALSNSALIDMKIEF 198

Query: 436 GVDTEGSIVLADVIDSDSWRLWP 504
           GV  EG I+LADVID+DSWR+WP
Sbjct: 199 GVTVEGEILLADVIDNDSWRVWP 221



 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 46/76 (60%), Positives = 54/76 (71%)
 Frame = +2

Query: 41  NLTNIITISGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFT 220
           N+   + + G+ T F K  SET F+++KC MIPIEWV RR+ATGSFLKRNPGV EGFRF 
Sbjct: 67  NVFEYLQLLGLPTHFEKSISETEFVARKCTMIPIEWVARRVATGSFLKRNPGVKEGFRFN 126

Query: 221 PPKQETFFKDDETTIP 268
             K ETFFKDD    P
Sbjct: 127 DLKLETFFKDDANDDP 142


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 131  MIPIEWVTRRLATGSFLKRNPGVPE 205
            M+P++W +R  A+ S   R+PG PE
Sbjct: 1278 MVPLDWWSRYYASMSQFHRSPGYPE 1302


>Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical
           protein ZK1251.8 protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = +2

Query: 104 TAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFFKDDETTIPNGQRS 283
           T F   KC+    E +   L    + + N  +PEG+   P K+    ++++  I      
Sbjct: 100 TLFHDTKCDPYSFEHLNIELIDRCYAEANVPIPEGYGGQPRKKIKNKEEEKDVIDETPAE 159

Query: 284 KSFQPNSIITXF*SVAT 334
           K    NS+I  F  + T
Sbjct: 160 KWSIGNSVIFAFTVITT 176


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 131  MIPIEWVTRRLATGSFLKRNPGVPE 205
            M+P++W +R  A+ S   R+PG PE
Sbjct: 1278 MVPLDWWSRYYASMSQFHRSPGYPE 1302


>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 262 DPQWSEEQIISAKFNYNGL-LIGRDEVDY----MRKATILIFEILEKAWALRDCALIDMK 426
           +P W+    +    +  G+ ++GR +       +R  T  I+ ++EK   + DC +    
Sbjct: 547 EPFWAHGDFVRVNHSTGGVEMLGRSDATLNRGGVRIGTAEIYSVVEKIPHIADCIVAGRL 606

Query: 427 IEFGVDTE 450
           +E G+D E
Sbjct: 607 VEEGMDEE 614


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 262 DPQWSEEQIISAKFNYNGL-LIGRDEVDY----MRKATILIFEILEKAWALRDCALIDMK 426
           +P W+    +    +  G+ ++GR +       +R  T  I+ ++EK   + DC +    
Sbjct: 547 EPFWAHGDFVRVNHSTGGVEMLGRSDATLNRGGVRIGTAEIYSVVEKIPHIADCIVAGRL 606

Query: 427 IEFGVDTE 450
           +E G+D E
Sbjct: 607 VEEGMDEE 614


>AJ505020-1|CAD43602.1|  382|Caenorhabditis elegans
           alpha-1->3-fucosyltransferase homologueprotein.
          Length = 382

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 19  PCSDECLEPYKYNHHFRNQNCL 84
           PC  E +EPYK+     N NC+
Sbjct: 235 PCVRELIEPYKFYLALENSNCV 256


>AC006674-5|AAF39933.2|  382|Caenorhabditis elegans Fucosyl
           transferase protein 4 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 19  PCSDECLEPYKYNHHFRNQNCL 84
           PC  E +EPYK+     N NC+
Sbjct: 235 PCVRELIEPYKFYLALENSNCV 256


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 497  NLQESESMTSA-NTMLPSVSTPNSIFMSISAQSRRAQAFSKISNIRIVAFLM*STSSRPI 321
            N  +++S+T   +T  P + TP++   S +A +  ++    +S  +I A  M  T  RPI
Sbjct: 3311 NTAQTQSLTVLESTSSPELLTPSNPETSNTASTSSSKQPKSLSEEKITATQMIQTRGRPI 3370

Query: 320  R 318
            R
Sbjct: 3371 R 3371


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
           protein 12 protein.
          Length = 1280

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 235 DVLQG*RNHDPQWSEEQI----ISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALR 402
           DV+Q  +   P WS+  +    +    +Y G L+G  ++ Y RK   L  E  ++  A+R
Sbjct: 660 DVMQFAKTKTPWWSKAPVQGTGMRGLASYKGTLVGLKDLMYGRKPKDLTREAKKELRAMR 719

Query: 403 DCA 411
             A
Sbjct: 720 QLA 722


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,775,973
Number of Sequences: 27780
Number of extensions: 243251
Number of successful extensions: 611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)