Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0504.Seq
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 224 PKQETFFKDDETTIPNGQRSKSFQPNS 304
           PK+ET  KDD+ +     +S+   PNS
Sbjct: 81  PKEETDDKDDDESDNENIKSQKEFPNS 107


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 215 FTPPKQETFFKDDETTIPNG 274
           FT  K  T+F+  +TTI NG
Sbjct: 454 FTVDKLITYFEQFDTTINNG 473


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 215 FTPPKQETFFKDDETTIPNG 274
           FT  K  T+F+  +TTI NG
Sbjct: 454 FTVDKLITYFEQFDTTINNG 473


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 503 GHNLQESESMTSANTMLPSVSTP 435
           GH+  + E M    +M P + TP
Sbjct: 707 GHDSGQDEDMAEDLSMAPDIMTP 729


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/44 (22%), Positives = 16/44 (36%)
 Frame = +2

Query: 179 LKRNPGVPEGFRFTPPKQETFFKDDETTIPNGQRSKSFQPNSII 310
           L  N  +   F+  PP    +  D+E    +        PNS +
Sbjct: 545 LNYNENIERFFKSKPPVATMYGSDEEIINSSNDEGGKTSPNSAV 588


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 194 GVPEGFRFTPPKQETFFKDDETTIPNGQRSKS 289
           G P+GF     + +   +DD   IP+   + S
Sbjct: 404 GSPDGFESVTSQYKNIREDDARHIPHASVTDS 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,478
Number of Sequences: 438
Number of extensions: 2982
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)