Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0504.Seq
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21110.1 68416.m02668 phosphoribosylamidoimidazole-succinocar...    35   0.036
At1g80170.1 68414.m09383 polygalacturonase, putative / pectinase...    27   9.6  
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P...    27   9.6  

>At3g21110.1 68416.m02668
           phosphoribosylamidoimidazole-succinocarboxamide synthase
           / SAICAR synthetase (PUR7) identical to
           phosphoribosylamidoimidazole-succinocarboxamide
           synthase, chloroplast [precursor] SP:P38025 from
           [Arabidopsis thaliana]
          Length = 411

 Score = 34.7 bits (76), Expect = 0.036
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 256 NHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEF 435
           +HD   S  +I+   F      + + E D      + +FE  +         L+D K EF
Sbjct: 242 DHDVPISPNEIVEGGF------MTQAEFDEASMKALSLFEFGQGVAKKHGLILVDTKYEF 295

Query: 436 GVDTEGSIVLADVIDS-DSWRLW 501
           G  ++GSI+L D I + DS R W
Sbjct: 296 GRSSDGSILLIDEIHTPDSSRYW 318



 Score = 30.3 bits (65), Expect = 0.78
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 80  AFVKIASETAFLSKKCEMIPIEWVTRRLATGS 175
           A V        ++KKC + PIE+V R   TGS
Sbjct: 167 AIVSSPDRNVVIAKKCSVFPIEFVVRGYVTGS 198


>At1g80170.1 68414.m09383 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase GI:7381227 from
           [Lycopersicon esculentum]; contains Pfam profile
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 444

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 216 SLLQNKRRSSRMTKPRSPMVRGANHF 293
           SLLQ  RR SR T+PRS  +    +F
Sbjct: 33  SLLQLPRRQSRSTRPRSERLLHVGNF 58


>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 604

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 218 TPPKQETFFKDDETTIP 268
           TPP   TFF DD+T  P
Sbjct: 45  TPPPPPTFFSDDQTDSP 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,237,747
Number of Sequences: 28952
Number of extensions: 232141
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)