Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0503.Seq
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 119 4e-28
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 82 7e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 69 7e-13
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 67 2e-12
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 66 4e-12
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 65 1e-11
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 62 8e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 55 1e-08
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 30 0.30
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 5.0
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 6.6
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 8.7
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 119 bits (287), Expect = 4e-28
Identities = 55/80 (68%), Positives = 67/80 (83%)
Frame = +2
Query: 17 QPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDG 196
Q +++L+EGTD +QG+ QL+SNINAC V D +RTTLGP G DKL+VD G+ VISNDG
Sbjct: 7 QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 197 ATIMKLLDIIHPAAKTLVDM 256
ATIMKLLDI+HPAAKTLVD+
Sbjct: 67 ATIMKLLDIVHPAAKTLVDI 86
Score = 101 bits (241), Expect = 1e-22
Identities = 48/84 (57%), Positives = 64/84 (76%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
A++QDAEVGDGTTSVV+ AGE+L+ + FVE+GV ++IR R A++LA+ KIKE A+
Sbjct: 87 ARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIH 146
Query: 436 IDNKSPEEQRDLLLKCASTAMSSK 507
+D + RDLL KCASTAM+SK
Sbjct: 147 LDLSDEGKLRDLLTKCASTAMNSK 170
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +3
Query: 663 KKTFSYAGFEMQPKTYKDCKI 725
KKTFSYAGFE QPK +K+ KI
Sbjct: 222 KKTFSYAGFEQQPKFFKNPKI 242
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 596 LGIKKVPGGALEDSFWFPEWAFQENF 673
+GIKKVPGGA+EDS AF++ F
Sbjct: 200 IGIKKVPGGAMEDSLLVKGVAFKKTF 225
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 82.2 bits (194), Expect = 7e-17
Identities = 39/72 (54%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Frame = +2
Query: 53 QTQGKPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDII 226
Q + KPQ V SNI A + V DA+RT+LGP+GMDK+I G+ +++NDGATI+K L ++
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71
Query: 227 HPAAKTLVDMQS 262
HPAAK LVD+ +
Sbjct: 72 HPAAKMLVDLSA 83
Score = 64.5 bits (150), Expect = 2e-11
Identities = 32/82 (39%), Positives = 54/82 (65%)
Frame = +1
Query: 262 SQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKID 441
+QD E GDGTTSVVILAG +L + +++G+HP V+ + + A+ ++ +KE A+ I+
Sbjct: 84 AQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE 143
Query: 442 NKSPEEQRDLLLKCASTAMSSK 507
R+ LL+ A+T+++SK
Sbjct: 144 ----LSDRESLLRAATTSLNSK 161
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 68.9 bits (161), Expect = 7e-13
Identities = 28/81 (34%), Positives = 52/81 (64%)
Frame = +2
Query: 14 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 193
MQ + ++ ++ G +SNI A + V D +RT LGPR M K+++D G +++ND
Sbjct: 1 MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60
Query: 194 GATIMKLLDIIHPAAKTLVDM 256
G I++ +++ HPAAK+++++
Sbjct: 61 GHAILREIEVAHPAAKSMIEL 81
Score = 65.7 bits (153), Expect = 7e-12
Identities = 33/84 (39%), Positives = 50/84 (59%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
A++QD EVGDGTTSV+ILAGEIL P ++ +HP V+IR+ + A A+ I E +
Sbjct: 82 ARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLP 141
Query: 436 IDNKSPEEQRDLLLKCASTAMSSK 507
++ E L+ C T + ++
Sbjct: 142 VNVDDNAEMFRLIRTCIGTKLVAR 165
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +2
Query: 32 LLREGTDQTQG-KPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIM 208
L REG QG + ++ N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 209 KLLDIIHPAAKTLVD 253
+ L++IHPAAK +VD
Sbjct: 73 RELEVIHPAAKLVVD 87
Score = 41.1 bits (92), Expect = 2e-04
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 259 KSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE-QAVK 435
+ Q+ E+GD VV+ GE+L + + + G+ P + + A +E ++E A K
Sbjct: 90 QQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADK 149
Query: 436 IDNKSPEEQRDLLLKCASTAMSSKRFINRRITS 534
I+ E++ L+K T +SSK++ N S
Sbjct: 150 IETVESEKE---LIKAIRTCISSKQYGNEDFLS 179
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 66.5 bits (155), Expect = 4e-12
Identities = 28/69 (40%), Positives = 46/69 (66%)
Frame = +2
Query: 50 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 229
++ G+ N+ A + + V+++LGP G+DK++VD G ++NDGATI+ LLD+ H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 230 PAAKTLVDM 256
PA K LV++
Sbjct: 75 PAGKVLVEL 83
Score = 62.1 bits (144), Expect = 8e-11
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE-QAV 432
A+ QD EVGDGTTSVVI+A E+L+R V+ +HP +I R A R A++ + + +
Sbjct: 84 AQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSC 143
Query: 433 KIDNKSPEEQRDLLLKCASTAMSSK 507
+D+ E L+ A T+MSSK
Sbjct: 144 SVDSLGKES----LINVAKTSMSSK 164
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 64.9 bits (151), Expect = 1e-11
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
+K QD EVGDGTTSV + A E+L++ + V +HP+V+I R A++ AI+ ++ A
Sbjct: 84 SKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALR--ASS 141
Query: 436 IDNKS-PEEQRDLLLKCASTAMSSK 507
IDN S P + R L A T +SSK
Sbjct: 142 IDNSSDPAKFRSDLENIARTTLSSK 166
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = +2
Query: 32 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDH-NGKAVISNDGATIM 208
+ E Q +G+ +S+ V D V++TLGP+GMDK++ + +G V++NDGATI+
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 209 KLLDIIHPAAKTLVDMQSLK 268
K + + + AAK LV++ ++
Sbjct: 68 KSIALDNAAAKVLVNISKVQ 87
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 62.1 bits (144), Expect = 8e-11
Identities = 28/73 (38%), Positives = 48/73 (65%)
Frame = +2
Query: 38 REGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLL 217
+E + G + S+I A + V + VRT+LGPRG+DK+++ +G+ ++NDGATI+ +
Sbjct: 24 QEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQM 83
Query: 218 DIIHPAAKTLVDM 256
++ H AK LV +
Sbjct: 84 EVEHQIAKLLVQL 96
Score = 59.3 bits (137), Expect = 6e-10
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
+KSQD E+GDGTT VV+LAG +L++ + +++G+HP + A ++A++ + +
Sbjct: 97 SKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDV 156
Query: 436 IDNKSPEEQRDLLLKCASTAMSSK 507
+D SPE + L + A T++ SK
Sbjct: 157 VD-FSPENTTN-LFRSAKTSLGSK 178
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/84 (36%), Positives = 49/84 (58%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
A +QD GDGTTSV +L GE+LK+ + ++ EG+HP ++ A A+ + + K
Sbjct: 79 ATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFL--DSFK 136
Query: 436 IDNKSPEEQRDLLLKCASTAMSSK 507
D E R++LL A T++S+K
Sbjct: 137 TDF---EVDREVLLNVAKTSLSTK 157
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +2
Query: 32 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 211
LL + Q L NI+A + D +++ LGP G K++VD G ++ DG ++
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
Query: 212 LLDIIHPAAKTL 247
+ I +P A +
Sbjct: 64 EMQIQNPTASCI 75
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 113 AVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 223
AV TLGP+G + LI G I+ DG T+ + + +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSL 93
Score = 28.7 bits (61), Expect = 0.93
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
A + GDGTT+ +L I V G +P L R ++ A +E + QA K
Sbjct: 109 ASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFL--QANK 166
Query: 436 IDNKSPEE 459
D + EE
Sbjct: 167 RDITTSEE 174
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 346 EEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 480
E+ V +L RA +L I+ QA K DNKS E+R+ L+
Sbjct: 863 EKSVEENILARA---QYKLDIDGKVIQAGKFDNKSTPEEREAFLR 904
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 331 LKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 480
L+ E+ + +L RA +L ++ QA K DNKS E+R+ L+
Sbjct: 1309 LRLITEKSIEENILSRA---QYKLDLDGKVIQAGKFDNKSTPEEREAFLR 1355
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 169 IVIYNQLVHTTGTQGGSDRIDNKL 98
++I+N LVH T T+ S+ + N L
Sbjct: 503 LIIFNNLVHETDTETDSETLLNDL 526
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,585
Number of Sequences: 5004
Number of extensions: 61984
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -