Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0503.Seq
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 133 1e-31
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 79 3e-15
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 76 2e-14
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 73 3e-13
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 69 3e-12
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 67 1e-11
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 59 3e-09
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 59 3e-09
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 54 1e-07
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 54 1e-07
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 40 0.002
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 35 0.066
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 34 0.087
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 34 0.087
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 34 0.12
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 34 0.12
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.15
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.15
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.20
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 33 0.27
At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate dehy... 30 1.4
At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate dehy... 30 1.4
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.4
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 4.3
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 28 7.6
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 28 7.6
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 28 7.6
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR... 27 10.0
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR... 27 10.0
At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containi... 27 10.0
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 133 bits (321), Expect = 1e-31
Identities = 64/84 (76%), Positives = 70/84 (83%)
Frame = +2
Query: 5 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 184
+S MQPQI+LL+EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G I
Sbjct: 2 ASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTI 61
Query: 185 SNDGATIMKLLDIIHPAAKTLVDM 256
SNDGATIMKLLDI+HPAAK LVD+
Sbjct: 62 SNDGATIMKLLDIVHPAAKILVDI 85
Score = 113 bits (273), Expect = 9e-26
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
AKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH + LIR+ RTAS LAI K+KE AV
Sbjct: 86 AKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAKVKELAVS 145
Query: 436 IDNKSPEEQRDLLLKCASTAMSSK 507
I+ KS EE++ LL KCA+T +SSK
Sbjct: 146 IEGKSVEEKKGLLAKCAATTLSSK 169
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +3
Query: 519 QKDHFSKIVVDGCPVFGHSTSASRHDWESRRFPVELLKIXXXXXXXXXKKTFSYAGFEMQ 698
+K+ F+ +VVD G+ + ++ P ++ KKTFSYAGFE Q
Sbjct: 174 EKEFFATMVVDAVMAIGNDDRLNLIG--IKKVPGGNMRDSFLVDGVAFKKTFSYAGFEQQ 231
Query: 699 PKTYKDCKI 725
PK + + KI
Sbjct: 232 PKKFLNPKI 240
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/73 (46%), Positives = 52/73 (71%)
Frame = +2
Query: 50 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 229
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 230 PAAKTLVDMQSLK 268
PAAK LV++ L+
Sbjct: 73 PAAKVLVELAELQ 85
Score = 66.5 bits (155), Expect = 2e-11
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R + + I+E K
Sbjct: 82 AELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEE---K 138
Query: 436 IDNKSPEEQRDLLLKCASTAMSSK 507
+ K + + L+ CA T+MSSK
Sbjct: 139 LVTKVEKLGKVPLINCAKTSMSSK 162
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 76.2 bits (179), Expect = 2e-14
Identities = 32/59 (54%), Positives = 48/59 (81%)
Frame = +2
Query: 80 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDM 256
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ PAAK LV++
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVEL 90
Score = 64.1 bits (149), Expect = 9e-11
Identities = 33/84 (39%), Positives = 53/84 (63%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
+KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI+ + AV
Sbjct: 91 SKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVP 150
Query: 436 IDNKSPEEQRDLLLKCASTAMSSK 507
++ RD L+K AST+++SK
Sbjct: 151 VE----LTDRDSLVKSASTSLNSK 170
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/81 (39%), Positives = 51/81 (62%)
Frame = +2
Query: 14 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 193
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 194 GATIMKLLDIIHPAAKTLVDM 256
G I++ LD+ HPAAK+++++
Sbjct: 61 GNAILRELDVAHPAAKSMIEL 81
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
+++QD EVGDGTTSV++LAGE+L + F+E+ HP V+ RA A +I + + A+
Sbjct: 82 SRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKIAMS 141
Query: 436 IDNKSPEEQRDLLLKCASTAMSSK 507
ID + L+ C T +S+
Sbjct: 142 IDINDRSQVLGLVKSCIGTKFTSQ 165
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Frame = +2
Query: 14 MQPQIL--LLREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 184
MQP + +L+EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 185 SNDGATIMKLLDIIHPAAKTLV 250
+ND ATI+ L+I HPAAK LV
Sbjct: 66 TNDAATIVNELEIQHPAAKLLV 87
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
AK+Q E+GDG + AGE+L+ + + G+HP +I A A+E I EQ V+
Sbjct: 90 AKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVE-ILEQLVE 148
Query: 436 IDNKSPE-EQRDLLLKCASTAMSSKRF 513
+++ + +D ++ A++SK+F
Sbjct: 149 TGSETMDVRNKDEVISRMRAAVASKQF 175
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 67.3 bits (157), Expect = 1e-11
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I R AS A + ++
Sbjct: 83 SKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECARNALLKRV-- 140
Query: 436 IDNK-SPEEQRDLLLKCASTAMSSK 507
IDNK + E+ R LLK A T + SK
Sbjct: 141 IDNKDNAEKFRSDLLKIAMTTLCSK 165
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = +2
Query: 32 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHN-GKAV-ISNDGATI 205
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 206 MKLLDIIHPAAKTLVDMQSLK 268
+K L I +PAAK LVD+ ++
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQ 86
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/89 (34%), Positives = 54/89 (60%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E ++ A K
Sbjct: 15 SRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQK 74
Query: 436 IDNKSPEEQRDLLLKCASTAMSSKRFINR 522
+ + L++ T +SSK +NR
Sbjct: 75 FE--FDVNNYEPLVQTCMTTLSSK-IVNR 100
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/89 (34%), Positives = 54/89 (60%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E ++ A K
Sbjct: 91 SRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQK 150
Query: 436 IDNKSPEEQRDLLLKCASTAMSSKRFINR 522
+ + L++ T +SSK +NR
Sbjct: 151 FE--FDVNNYEPLVQTCMTTLSSK-IVNR 176
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Frame = +2
Query: 29 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGAT 202
++LRE +T+ G +NI A + V +R++LGP+GMDK++ +G I+NDGAT
Sbjct: 13 IILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGAT 72
Query: 203 IMKLLDIIHPAAKTLVDM 256
I++ +D+ + AK +V++
Sbjct: 73 ILEQMDVDNQIAKLMVEL 90
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++ +
Sbjct: 80 AVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTP 139
Query: 436 IDNKSPEEQRDLLLKCASTAMSSKRF 513
+ E +++L A T + +K +
Sbjct: 140 V-VMGDEVDKEILKMVARTTLRTKLY 164
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/51 (35%), Positives = 33/51 (64%)
Frame = +2
Query: 86 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAA 238
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTA 73
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++ +
Sbjct: 80 AVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTP 139
Query: 436 IDNKSPEEQRDLLLKCASTAMSSKRF 513
+ E +++L A T + +K +
Sbjct: 140 V-VMGDEPDKEILKMVARTTLRTKLY 164
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/51 (35%), Positives = 33/51 (64%)
Frame = +2
Query: 86 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAA 238
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTA 73
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +2
Query: 104 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK---LLDIIHPAAKTLVDMQSLKM 271
+ DAV TLGPRG + ++ + + VI NDG TI K L D I A TL+ ++KM
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIELPDTIENAGATLIQEVAIKM 112
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 34.7 bits (76), Expect = 0.066
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 429
+K+ D+ GDGTT+ ILA EI+K V G +P L R + + IE+++++A
Sbjct: 123 SKTNDS-AGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA 179
Score = 34.3 bits (75), Expect = 0.087
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 104 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 223
+ D V TLGPRG + +++D G + NDG TI + +++
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIEL 106
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.087
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 436 IDN 444
+++
Sbjct: 193 VED 195
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 104 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 232
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 120
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.087
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 436 IDN 444
+++
Sbjct: 193 VED 195
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 104 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 232
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 120
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
+K+ D GDGTT+ V+LA ++ V G +P ++ R + ++ + ++K+ + +
Sbjct: 130 SKTNDL-AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAELKKMSKE 188
Query: 436 IDN 444
+++
Sbjct: 189 VED 191
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 104 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 232
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 116
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 104 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 220
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIE 92
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 104 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 220
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIE 91
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 104 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 211
V +AV+ T+GP+G + +I G I+ DG T+ K
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
A + + GDGTT +L IL V GV+ L + A + +K +AV
Sbjct: 108 ASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAVM 167
Query: 436 IDNKSPEE 459
I +PEE
Sbjct: 168 I--STPEE 173
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K + +
Sbjct: 130 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKE 188
Query: 436 IDN 444
+++
Sbjct: 189 VED 191
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 104 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 232
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 116
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 101 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 232
+V + TLGP+G + ++ + G I NDG T++K +++ P
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDP 104
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +1
Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
AK+ D GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +
Sbjct: 118 AKTNDL-AGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSRE 176
Query: 436 IDN 444
I++
Sbjct: 177 IED 179
>At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +1
Query: 352 GVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKRFINRRIT 531
G + IR R A R + E ++ N + R L+ +CA R +R +
Sbjct: 66 GFRDKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLY 125
Query: 532 SXXXXXXXXXXX--DTPLLPLDMIGNQEGSRWSS 627
+ DTPL PL ++ N + + W +
Sbjct: 126 ADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDA 159
>At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +1
Query: 352 GVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKRFINRRIT 531
G + IR R A R + E ++ N + R L+ +CA R +R +
Sbjct: 66 GFRDKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLY 125
Query: 532 SXXXXXXXXXXX--DTPLLPLDMIGNQEGSRWSS 627
+ DTPL PL ++ N + + W +
Sbjct: 126 ADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDA 159
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 29 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDK 151
++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 13 IILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 322 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 462
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +1
Query: 91 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 174
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +1
Query: 91 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 174
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +1
Query: 91 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 174
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1298
Score = 27.5 bits (58), Expect = 10.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 483 CINSDVIETIHQQKDHFSKIVVDGCPV---FGHSTSASRHDWESRRFPVELL 629
C+N D +HQQ F+ +++ G V F + TS S+ S P+ LL
Sbjct: 982 CVNLDREPVLHQQSIIFNSMILPGEEVPSYFTYRTSDSQPFGTSSSLPIPLL 1033
>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1353
Score = 27.5 bits (58), Expect = 10.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 483 CINSDVIETIHQQKDHFSKIVVDGCPV---FGHSTSASRHDWESRRFPVELL 629
C+N D +HQQ F+ +++ G V F + TS S+ S P+ LL
Sbjct: 943 CVNLDREPVLHQQSIIFNSMILPGEEVPSYFTYRTSDSQPFGTSSSLPIPLL 994
>At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 787
Score = 27.5 bits (58), Expect = 10.0
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = -3
Query: 453 RRLIINFHSLLLDFLNGQS*RCSDCSDQNTRVNTFFNKRLQPLQNFTGQYHYRGGSIANL 274
R L N+ SL L + + C SD T + ++ + + Y +RG I L
Sbjct: 332 RELDPNYESLSLALVELYA-ECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQAL 390
Query: 273 GILRLCISTRVLAAG*MISSS 211
G+ R ++ R+ ++SS
Sbjct: 391 GLFRQMVTQRIKPDAFTLASS 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,351,452
Number of Sequences: 28952
Number of extensions: 343000
Number of successful extensions: 1017
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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