Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0501.Seq
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.6  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   4.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   7.9  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 192 STNSRAFTCFLYQSKNSRSLILP 260
           S  SR +T FLY  ++    +LP
Sbjct: 406 SPESRQYTAFLYNGRSYTYQVLP 428


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 275 MMRFLRSCLYRNKHVPDSAHVSRHL 349
           +  ++   L + K  PD A + RHL
Sbjct: 43  LKNYVNCLLEKGKCTPDGAELKRHL 67


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 438 KDNSASNGSGDFLAALHTQTNMTVVVANGNK 346
           K NS +NGS D +      ++    + NG+K
Sbjct: 279 KPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 440 LSCQFYQSEEVTGVTR*ESHTPSLQGHR 523
           +SC  YQ+ E   V   ES  P +   R
Sbjct: 369 VSCTHYQNPEYISVVNPESPYPQIGSER 396


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/23 (30%), Positives = 9/23 (39%)
 Frame = +2

Query: 503 PSLQGHRQVWFRNSPANSCTSWY 571
           P      Q W  N P+ S   W+
Sbjct: 355 PKRSSDEQQWRNNQPSTSNNRWH 377


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,674
Number of Sequences: 336
Number of extensions: 3017
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)