Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0501.Seq
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   144   7e-36
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.6  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.3  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   8.4  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   8.4  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  144 bits (350), Expect = 7e-36
 Identities = 61/79 (77%), Positives = 74/79 (93%)
 Frame = +1

Query: 271 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 450
           LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS
Sbjct: 75  LNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLS 134

Query: 451 VLPVRRGYWGNKIGKPHTV 507
           ++P+RRGYWG  +G PHTV
Sbjct: 135 IMPIRRGYWGTALGDPHTV 153



 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 27/42 (64%), Positives = 38/42 (90%)
 Frame = +2

Query: 128 KEDQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
           ++++K+WVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVD 69



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 20/25 (80%), Positives = 23/25 (92%)
 Frame = +3

Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
           P KV+GKCGSVTVRL+PAPRG G+V
Sbjct: 154 PVKVSGKCGSVTVRLVPAPRGAGLV 178


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 195 TNSRAFTCFLYQSKNSRSLILPRHV 269
           TNS+AF C    S  +RS +L RHV
Sbjct: 42  TNSKAFICPHCSSSFTRSDVLNRHV 66


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 131 EDQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDSSSARP 271
           +D+ +W P++    LV   ++   E  +++    K++E+ID     P
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELIDDQEETP 287


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 119 NDHGRDHDRVHEDRHGIYLH 60
           NDH   H   + + HGI+LH
Sbjct: 570 NDHHCHHHHENHNMHGIFLH 589


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +1

Query: 256 FLGTSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSKEVA-TAIRG 426
           F G  +  E + ++P       G  TRF   V   D NG   I  G+  + E A  ++ G
Sbjct: 383 FAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAACVSVHG 442

Query: 427 AIILAKLSVLPV 462
              L   S+L +
Sbjct: 443 GNRLGANSLLDI 454


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 132 KTRKIGFLSPNSAVLFAKEKSTNSRAFTCFL 224
           K RK+  +S N+  +F+K ++  S AFT  L
Sbjct: 310 KLRKVKKISKNAKRIFSKTRNAISTAFTDML 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,516
Number of Sequences: 5004
Number of extensions: 49318
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)