Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0501.Seq
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 155 3e-38
07_01_0756 + 5819367-5820038,5820847-5821005 152 2e-37
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 42 3e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.1
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 155 bits (376), Expect = 3e-38
Identities = 70/79 (88%), Positives = 76/79 (96%)
Frame = +1
Query: 271 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 450
L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLS
Sbjct: 85 LKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLS 144
Query: 451 VLPVRRGYWGNKIGKPHTV 507
V+PVRRGYWGNKIG+PHTV
Sbjct: 145 VVPVRRGYWGNKIGQPHTV 163
Score = 63.3 bits (147), Expect = 1e-10
Identities = 24/43 (55%), Positives = 37/43 (86%)
Frame = +2
Query: 128 KEDQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDS 256
+++++ WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I+++
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVET 80
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
PCKVTGKCGSVTVR++PAPRG+GIV
Sbjct: 164 PCKVTGKCGSVTVRMVPAPRGSGIV 188
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 152 bits (369), Expect = 2e-37
Identities = 69/79 (87%), Positives = 75/79 (94%)
Frame = +1
Query: 271 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 450
L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLS
Sbjct: 88 LKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLS 147
Query: 451 VLPVRRGYWGNKIGKPHTV 507
V+PVRRGYWGNKIGKPHTV
Sbjct: 148 VVPVRRGYWGNKIGKPHTV 166
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +2
Query: 128 KEDQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
+++++ WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE 82
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
PCKVTGKCGSVTVR++PAPRG+GIV
Sbjct: 167 PCKVTGKCGSVTVRMVPAPRGSGIV 191
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 274 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 453
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 454 LPV 462
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 346 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTV 507
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTV 51
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 489 RKATHRPCKVTGKCGSVTVRLIPAPRGTGIV 581
RK CKV K GSVTVR++ P G+ +V
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVV 76
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 408 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQGRAEEESMISNS 235
+F+A LHT +M V +E C LS F+ +HD I +M+S S
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHDTDCCAISHAWAMSTMLSCS 712
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,397,073
Number of Sequences: 37544
Number of extensions: 363375
Number of successful extensions: 1001
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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