Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0501.Seq
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 148 3e-36
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p... 28 4.4
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p... 28 4.4
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos... 28 4.4
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ... 28 4.4
U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop heli... 28 5.8
AC006790-7|AAF60731.1| 547|Caenorhabditis elegans Suppressor of... 28 5.8
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81584-8|CAE17906.1| 77|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 148 bits (358), Expect = 3e-36
Identities = 69/83 (83%), Positives = 76/83 (91%)
Frame = +1
Query: 259 LGTSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 438
L ++L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+
Sbjct: 94 LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVA 153
Query: 439 AKLSVLPVRRGYWGNKIGKPHTV 507
AKL+V+PVRRGYWGNKIG PHTV
Sbjct: 154 AKLAVVPVRRGYWGNKIGLPHTV 176
Score = 64.5 bits (150), Expect = 5e-11
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +2
Query: 131 EDQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDS 256
E + +W PVTKLGRLV+E KI LE IYL SLPIKEFEIID+
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA 93
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +3
Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
PCKVTGKC SV VRLIPAPRGTGIV
Sbjct: 177 PCKVTGKCASVMVRLIPAPRGTGIV 201
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 351 NKCLETCALSGTCLFLYR-HDLKNLIIQGRAEEESMISNSLIGKEN 217
++CLE C +S C F Y+ D+ N +I R M++ + N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 351 NKCLETCALSGTCLFLYR-HDLKNLIIQGRAEEESMISNSLIGKEN 217
++CLE C +S C F Y+ D+ N +I R M++ + N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331
>Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical
protein K03A11.4 protein.
Length = 664
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 129 RKTRKIGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSLILPRHVP 272
RKT KI + +A T + YQS NS S +PR +P
Sbjct: 455 RKTTKILEIMTENAKQIQSHYDTRATILDIMKYQSANSFSETMPREIP 502
>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 556 GISRTVTEPHLPVTLQGRCVAFLSCYPSNLFGLVELTA 443
G+ V PH + +QGR L+ P + G+VE A
Sbjct: 134 GVGLNVNNPHFLI-MQGRITTVLNMKPEEILGMVEEAA 170
>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 556 GISRTVTEPHLPVTLQGRCVAFLSCYPSNLFGLVELTA 443
G+ V PH + +QGR L+ P + G+VE A
Sbjct: 134 GVGLNVNNPHFLI-MQGRITTVLNMKPEEILGMVEEAA 170
>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
and X-chromosomeassociated MIX-1 protein protein.
Length = 1244
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 556 GISRTVTEPHLPVTLQGRCVAFLSCYPSNLFGLVELTA 443
G+ V PH + +QGR L+ P + G+VE A
Sbjct: 134 GVGLNVNNPHFLI-MQGRITTVLNMKPEEILGMVEEAA 170
>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 556 GISRTVTEPHLPVTLQGRCVAFLSCYPSNLFGLVELTA 443
G+ V PH + +QGR L+ P + G+VE A
Sbjct: 134 GVGLNVNNPHFLI-MQGRITTVLNMKPEEILGMVEEAA 170
>U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop helix
protein 15 protein.
Length = 89
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 181 RRKNRQTREHLLVFFTNQRIRDH*FFLGTSLNDEVLKIMPVQKQTRAGQRTRFK-AFVAI 357
R++ R T ++ + T +RIR F + S +L +PV+K+ + RF A+++
Sbjct: 24 RKRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISF 83
Query: 358 GDN 366
DN
Sbjct: 84 LDN 86
>AC006790-7|AAF60731.1| 547|Caenorhabditis elegans Suppressor of
mec and unc defectsprotein 2 protein.
Length = 547
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 125 RANDHGRDHDRVHEDRHGIYLHRVIRKRRENRHVHRLEQR 6
R+ D RD DR + DR Y + RRE R +QR
Sbjct: 354 RSRDRDRDRDRDNRDR---YFEKSANSRREEEQNRREQQR 390
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
H06O01.2 protein.
Length = 1461
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 122 ANDHGRDHDRVHEDRHGIYLHRVIRKRRENRH 27
+ DH R+H H+D H + HR K + RH
Sbjct: 1433 SKDHHREH---HKDHHKDHHHREQHKEKNRRH 1461
>Z81584-8|CAE17906.1| 77|Caenorhabditis elegans Hypothetical
protein T04C12.8 protein.
Length = 77
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 577 IPVPRGAGISRTVTEPHLPVTLQGRCVAFLSC 482
+P+P+GA +++ P L L +AFL C
Sbjct: 32 VPMPKGASCPQSIFRPSLLFYLAPAVIAFLIC 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,521,322
Number of Sequences: 27780
Number of extensions: 296824
Number of successful extensions: 795
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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