Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0501.Seq
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 162 2e-40
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 162 2e-40
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 162 2e-40
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 162 2e-40
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 161 2e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 161 3e-40
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 8e-06
At3g63100.1 68416.m07087 glycine-rich protein 30 1.3
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 30 1.3
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.1
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 28 4.1
At3g01450.1 68416.m00069 expressed protein 28 4.1
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 162 bits (393), Expect = 2e-40
Identities = 76/91 (83%), Positives = 83/91 (91%)
Frame = +1
Query: 235 RIRDH*FFLGTSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 414
+I DH +G +L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 415 AIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 507
AIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +2
Query: 134 DQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++ WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
PCKVTGKCGSVTVR++PAPRG+GIV
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIV 198
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 162 bits (393), Expect = 2e-40
Identities = 76/91 (83%), Positives = 83/91 (91%)
Frame = +1
Query: 235 RIRDH*FFLGTSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 414
+I DH +G +L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 415 AIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 507
AIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +2
Query: 134 DQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++ WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
PCKVTGKCGSVTVR++PAPRG+GIV
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIV 198
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 162 bits (393), Expect = 2e-40
Identities = 76/91 (83%), Positives = 83/91 (91%)
Frame = +1
Query: 235 RIRDH*FFLGTSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 414
+I DH +G +L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 415 AIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 507
AIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +2
Query: 134 DQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++ WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
PCKVTGKCGSVTVR++PAPRG+GIV
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIV 198
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 162 bits (393), Expect = 2e-40
Identities = 76/91 (83%), Positives = 83/91 (91%)
Frame = +1
Query: 235 RIRDH*FFLGTSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 414
+I DH +G +L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 415 AIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 507
AIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +2
Query: 134 DQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++ WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
PCKVTGKCGSVTVR++PAPRG+GIV
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIV 198
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 161 bits (392), Expect = 2e-40
Identities = 72/83 (86%), Positives = 80/83 (96%)
Frame = +1
Query: 259 LGTSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 438
+G SL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 83 VGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIIL 142
Query: 439 AKLSVLPVRRGYWGNKIGKPHTV 507
AKLSV+P+RRGYWGNKIGKPHTV
Sbjct: 143 AKLSVVPIRRGYWGNKIGKPHTV 165
Score = 67.3 bits (157), Expect = 7e-12
Identities = 28/40 (70%), Positives = 36/40 (90%)
Frame = +2
Query: 134 DQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
+++ WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIID 80
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
PCKVTGKCGSVTVR++PAPRG+GIV
Sbjct: 166 PCKVTGKCGSVTVRMVPAPRGSGIV 190
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 161 bits (391), Expect = 3e-40
Identities = 73/83 (87%), Positives = 79/83 (95%)
Frame = +1
Query: 259 LGTSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 438
+G +L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 92 IGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIIL 151
Query: 439 AKLSVLPVRRGYWGNKIGKPHTV 507
AKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 152 AKLSVVPVRRGYWGNKIGKPHTV 174
Score = 59.7 bits (138), Expect = 1e-09
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +2
Query: 134 DQKDWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
+++ WVPVTKLGRLV G I ++E IYL SLP+KE++IID
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIID 89
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 507 PCKVTGKCGSVTVRLIPAPRGTGIV 581
PCKVTGKCGSVTVR++PAPRG+GIV
Sbjct: 175 PCKVTGKCGSVTVRMVPAPRGSGIV 199
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 277 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 456
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 457 PV 462
V
Sbjct: 209 QV 210
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = -2
Query: 113 HGRDH----DRVHEDRHGIYLHRVIRKRRENRHVH 21
HGRDH DR H HG + HR R+ R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.9 bits (64), Expect = 1.3
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = -2
Query: 485 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 306
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 305 CTGMILRTSSFRDV 264
+G + R + R V
Sbjct: 225 -SGCVPRLEAARTV 237
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 343 AFVAIGDNNGHIGLGVKCSKE 405
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 125 RANDHGRDHDRVHEDRHGIYLHRVIRKRRENRHVHRLEQR 6
R +D R+ DR + R HR I K R H H E+R
Sbjct: 118 RYSDRSRERDRSQDRRKD---HRYIEKERAYEHSHDFERR 154
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 506 TVCGFPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 327
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 326 CPARVCF 306
A CF
Sbjct: 218 AKASTCF 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,807,441
Number of Sequences: 28952
Number of extensions: 277749
Number of successful extensions: 716
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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