Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0500.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    26   0.26 
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    26   0.34 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   3.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.7  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 136 PGSPRRIAIPRQVPSRTTQ*LVRCKQFHRRSLNYNINQKSSKYKK 2
           P  P+R+ I    PS   Q + +   FH+  L  NI+ K    K+
Sbjct: 48  PEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNNISDKHGFLKE 92


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 136 PGSPRRIAIPRQVPSRTTQ*LVRCKQFHRRSLNYNINQK 20
           P  P+R+ I    PS   Q + +   FH+  L  NI+ K
Sbjct: 48  PEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNNISDK 86


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 511 NFH*YSVHIPISALYIK*RWCFTYNLREYEIVQIYTRYQR 392
           +FH   +HI I  ++ K    + +N   Y ++ + T Y+R
Sbjct: 55  SFHRNEIHIKIVLMFFKEASLYCFN---YYVIVVTTFYKR 91


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 461 FYVQCGYRYMYRVL 502
           F V+ GYRY +RV+
Sbjct: 272 FTVEQGYRYRFRVI 285


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 284 DVITITPD*SDTKIILRRRLKNISP 210
           DVI + P+ SD++  L    K ISP
Sbjct: 289 DVIKVEPELSDSEKTLCNGSKGISP 313


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 590 FIPGLSGLLSAS 555
           F+PG+ GLLS S
Sbjct: 206 FVPGVLGLLSRS 217


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 590 FIPGLSGLLSAS 555
           F+PG+ GLLS S
Sbjct: 206 FVPGVLGLLSRS 217


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 590 FIPGLSGLLSAS 555
           F+PG+ GLLS S
Sbjct: 206 FVPGVLGLLSRS 217


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 590 FIPGLSGLLSAS 555
           F+PG+ GLLS S
Sbjct: 206 FVPGVLGLLSRS 217


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 71  HQSLCGTGW 97
           +Q LCG GW
Sbjct: 121 YQCLCGVGW 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,849
Number of Sequences: 336
Number of extensions: 3896
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)