Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0500.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   4.5  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.5  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   7.9  

>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = -1

Query: 590 FIPGLSGLLSASRYYIKHPHDM*FTDQFPLVLGTYTYIRTVHKIAVVFYLQP*GIRNSTN 411
           F+P  +G   AS   I +  +    +QF      +T    V  +AV F     G  N+T 
Sbjct: 151 FVPHWNGTYLASNVQIFNSSNE--LEQFAAESAYFTTKHGVRVLAVGFLYDFTGNANNTV 208

Query: 410 IY*VSKKCNEHWYQ 369
           +  V    N  WYQ
Sbjct: 209 VTPVETAVNSRWYQ 222


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 583 GIKLHFPNAGSSISWATLPLTXNNARFVTPTGSTDSI 693
           G+ +H+ ++GS  S  TLPL      F+     T+ +
Sbjct: 171 GLGIHYNHSGSQSSLITLPLPQKQPDFLRMNNDTNEL 207


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 245  IILRRRLKNISPPGMFKN 192
            I+LRRRL  ++P G FK+
Sbjct: 1622 IVLRRRLSQVAPYGKFKH 1639


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 205 ECLRILRMSIAQIHRIIS*LSSCPGSPRRIAIPRQVPSRTTQ 80
           + LRI  +S   +HR+I   S    SPR  +   Q+ +R TQ
Sbjct: 162 DVLRISNLSSKILHRLILYNSKVGDSPRFCSALFQITNRATQ 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,658
Number of Sequences: 5004
Number of extensions: 61200
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)