Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0500.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751     30   1.5  
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684...    29   3.5  
11_01_0459 + 3546101-3548771,3548871-3549238                           28   8.2  

>08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751
          Length = 478

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 674 VGVTKRALFXVSGSVAQLILEPAFGKCNFIPGLSGLLSASR 552
           V   K+      G +A + LEP  G   FIP   G L+A R
Sbjct: 237 VEAVKKLFEENKGQIAAVFLEPVVGNAGFIPPQPGFLNALR 277


>04_04_0016 -
           22167780-22167873,22167978-22168272,22168380-22168455,
           22168665-22168853,22168955-22169176,22169315-22169413,
           22169502-22169582,22169753-22170060,22171611-22171950,
           22172047-22172110,22172191-22172412,22172865-22173043
          Length = 722

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 20  FLIDVVVK*SSVELFTTHQSLCGTGWNLSRYRDPPRRAGT 139
           +L+  +VK  +VEL+ TH + CG  + L+    P R  GT
Sbjct: 192 YLLTRIVKLITVELYCTHTAACGF-YYLATTLPPAREGGT 230


>11_01_0459 + 3546101-3548771,3548871-3549238
          Length = 1012

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = -2

Query: 691 SSLXNQSELRNEHYXPS--AAVLPN*YLSQRLESAILFRGSPDYFQPLGITLNIRMICDL 518
           SS  N +ELRN ++  +     +PN + +  +   ++  G+    +     LNI  + DL
Sbjct: 185 SSFANITELRNLNFASNNIKGNIPNEFSNFLMMEILILGGNMLTGRFPQAILNISTLIDL 244

Query: 517 QINFH*YSVHIPISALY 467
            +NF+  S  +P + LY
Sbjct: 245 FLNFNHLSGEVPSNILY 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,814
Number of Sequences: 37544
Number of extensions: 349857
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)