Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0500.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.5  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 371 DTNVRCISLIPSIYLYY 421
           D+NV  +  +PSIYL Y
Sbjct: 33  DSNVEVVVGVPSIYLTY 49


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 410 YLYYFVFPKVVSKTPPLFYVQCGYRYMYR 496
           +L Y +F   +S   PLF +   Y  +YR
Sbjct: 203 HLGYLIFSSTISFYLPLFVMVFTYYKIYR 231



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 381 FVAFL*YLVYICTISYSLRL*VKHHRYF-MYSADI 482
           F   L YL++  TIS+ L L V    Y+ +Y A +
Sbjct: 200 FTEHLGYLIFSSTISFYLPLFVMVFTYYKIYRAAV 234


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 257 SDTKIILRRRLKNISPPGMFKNIKDVN 177
           S   + LR+  KNI   G+ KN++  N
Sbjct: 80  SQGSVTLRQEYKNIKLYGLTKNLEIKN 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,577
Number of Sequences: 438
Number of extensions: 4743
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)