Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0498.Seq
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064...    29   4.7  
02_02_0298 - 8713660-8714073                                           28   6.2  
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41...    28   8.2  

>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
            10606664-10608382,10609848-10610791
          Length = 1091

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 258  IFSKRNIDPEQIKEINNYYDIETTVTVEF 344
            +F K N+D ++++ + ++YDIE  V   F
Sbjct: 1029 VFIKVNVDSDELESVTDWYDIEGIVPTFF 1057


>02_02_0298 - 8713660-8714073
          Length = 137

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 383 LLQKQNRRSNNGKLQTDPFSGDHCAEC 463
           +LQ+  R+ N G L T   +GD CA C
Sbjct: 77  VLQEMARKRNRGLLTTAAAAGDACAAC 103


>05_01_0060 -
           418559-418577,418655-418738,418857-418966,419467-419577,
           419914-419992,420182-420264,420347-420439,420902-421810
          Length = 495

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 611 AGDQHLKPXTDHLNQLKRSGCKRSKRRI 694
           A D+H +P  DHL++ KR   ++ + R+
Sbjct: 62  ADDRHTRPTDDHLDRAKRRYLRKRRSRL 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,743,433
Number of Sequences: 37544
Number of extensions: 325935
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)