Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0497.Seq
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57342| Best HMM Match : Arf (HMM E-Value=0) 39 0.005
SB_53421| Best HMM Match : Arf (HMM E-Value=0) 37 0.022
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 36 0.050
SB_11310| Best HMM Match : Arf (HMM E-Value=0) 35 0.066
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.088
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 30 1.9
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.9
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7) 28 7.6
SB_11681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
Length = 457
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYIT-SNKTLKIVDLPGQERLRNKFFEQHKSSAKG 431
KT + +L + T ++ N+E N T + D+ GQ+++R + + + A+G
Sbjct: 122 KTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGGQDKIR-RLWRHYFQGAEG 180
Query: 432 IVFVIDSINIQKEIRDVAEYLYTIL 506
I+FV+DS + ++ I +V E L +L
Sbjct: 181 IIFVVDSAD-KERIFEVREELTRVL 204
>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
Length = 625
Score = 36.7 bits (81), Expect = 0.022
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = +3
Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGI 434
KT + RL + T ++ N+E N + + D+ GQ+++R + + +GI
Sbjct: 9 KTTILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIR-ALWRVYYQGCQGI 67
Query: 435 VFVIDSINIQK 467
+FV+DS + ++
Sbjct: 68 IFVVDSADRER 78
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 35.5 bits (78), Expect = 0.050
Identities = 20/84 (23%), Positives = 44/84 (52%)
Frame = +3
Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGI 434
KT + +L + T ++ N+E N + + D+ GQ+++R + + + +G+
Sbjct: 30 KTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWRHYFQNTQGL 88
Query: 435 VFVIDSINIQKEIRDVAEYLYTIL 506
+FV+DS N ++ + + E L +L
Sbjct: 89 IFVVDS-NDRERVGEAREELNRML 111
>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
Length = 255
Score = 35.1 bits (77), Expect = 0.066
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +3
Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGI 434
KT + L + T ++ N+E N + D+ GQ+++R + + +G+
Sbjct: 103 KTTILYHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGGQDKIR-LLWRLYFQETQGL 161
Query: 435 VFVIDSINIQKEIRDVAEYLYTIL 506
+FV+DS N + I++ E L+ +L
Sbjct: 162 IFVVDS-NDRDRIQEAKEELFKLL 184
>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 34.7 bits (76), Expect = 0.088
Identities = 19/84 (22%), Positives = 44/84 (52%)
Frame = +3
Query: 255 KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGI 434
KT + +L + T ++ N+E N + + D+ GQ+++R + + + +G+
Sbjct: 30 KTTILYKLKLGEIVTTIPTIGFNVESVEYKNISFTVWDVGGQDKIR-PLWRHYFQNTQGL 88
Query: 435 VFVIDSINIQKEIRDVAEYLYTIL 506
++V+DS N ++ + + E L +L
Sbjct: 89 IYVVDS-NDRERVNESKEELNKML 111
>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 114 RTDPERSTIHNLT*PYCSSSNPHILVDFLSKVYSSQLSIVNGPIRLWKTLL-FVRLAYSQ 290
+ +P I+N P S+ ++ + F+ VY+ + IVN + + + F+R A ++
Sbjct: 1288 KRNPNELRINNYNPPCLSAWRANMDIQFVLDVYACAVYIVNYISKGQRGMSEFLREACTE 1347
Query: 291 YRQTFTSMKENIEEYITSNKTLKIVDLPGQE 383
RQ + ++K+ + + +K L V++ QE
Sbjct: 1348 ARQGYKTIKKQVRD--IGSKFLNNVEISAQE 1376
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 159 YCSSSNPHILVDFLSKVYSSQLSIVNGPI 245
YC++SNPH + FL+KV + +S+ +
Sbjct: 812 YCNASNPHASMRFLAKVPAPPVSVAGSSV 840
>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 943
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 114 RTDPERSTIHNLT*PYCSSSNPHILVDFLSKVYSSQLSIVNGPIRLWKTLL-FVRLAYSQ 290
+ +P I+N P S+ ++ + F+ VY+ + IVN + + + F+R A ++
Sbjct: 769 KRNPNELRINNYNPPCLSAWRANMDIQFVLDVYACAVYIVNYISKGQRGMSEFLREACTE 828
Query: 291 YRQTFTSMKENIEEYITSNKTLKIVDLPGQE 383
RQ + ++K+ + + +K L V++ QE
Sbjct: 829 ARQGYKTIKKQVRD--IGSKFLNNVEISAQE 857
>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
Length = 464
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = -1
Query: 449 INHKHNSLSTTLVLFKEFISQSL--LSRQINYFQCFI-RSYILFNIFFHRSKSLSVLRVS 279
I H H SLSTT+V +S ++ ++R ++ + RS + + HRS S++++ V
Sbjct: 255 IVHVHRSLSTTIVHVNRPLSITIVHVNRPLSITIVHVHRSLSITIVHVHRSLSITIVHVH 314
Query: 278 ESYKQQSLPESDRPINNT 225
S ++ +RP++ T
Sbjct: 315 RSL-STTIVYVNRPLSIT 331
>SB_11681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 490 TYTQSCGSDHSGKHNSPSNI--VQQNRDQPLAKGSQVI 597
TYT G D G ++P N+ Q +DQ L++G+ +
Sbjct: 196 TYTGEGGRDLKGTKSNPKNLRTAPQTKDQTLSRGNMAL 233
>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Frame = -1
Query: 719 IFTPLYLGTTXCCLPDGID---GLQLDSIWSHELNLFLFRV----IPLITWLPFAN---G 570
+F P+Y+ C LP+ I G Q +W L+L L+ + L + F N G
Sbjct: 380 LFAPVYIAAGVCTLPEYIHRRFGGQRIRVWLSVLSLLLYIFTKISVNLYSGALFINLALG 439
Query: 569 WSLFCCTIL 543
W+L+ IL
Sbjct: 440 WNLYAAIIL 448
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Frame = -2
Query: 445 ITNTIPLALLLCCSKNLFLSLSCP--------GRSTIFNVLLEVIYSSIFSFIE 308
+T T + L++ + FLS++CP R+ + L ++YSS+FSF++
Sbjct: 496 MTYTSQVLLVVVLTFERFLSITCPIFHRNHVTFRAAVITSLTILLYSSVFSFVQ 549
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 433 IPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSI 323
IPL LL+ C K F C S++ +++++ SI
Sbjct: 640 IPLKLLVTCKKGKFSGQVCNPNSSVVKYVIQIVQWSI 676
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,262,464
Number of Sequences: 59808
Number of extensions: 472689
Number of successful extensions: 1536
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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