Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0496.Seq
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 323 DPKIQQDMKHWPF 361
           DP + +D +HW F
Sbjct: 855 DPAVYEDWRHWKF 867


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 702 SSSPKIEDRTFLSPLXFLSKTVREARAAVGSLNDAKHVS 586
           S+S    D    SPL  +S T       V SL +  HV+
Sbjct: 476 SASDVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVA 514



 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 528 HTSTTPSVRATKDAGAIAGLKRASHHSTS 614
           H S+ P + AT   G     +RA+  STS
Sbjct: 520 HASSAPLLAATLAGGLCPHRRRANSGSTS 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,300
Number of Sequences: 438
Number of extensions: 4206
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)