Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0495.Seq
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    27   0.11 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    27   0.11 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.4  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 673 HLRSQSFPMTQIFHWLTGYHLSHFPVHSLLAAFQQQLELYAH 548
           H  +Q  P  Q++     +H SH P HS+ AA   +   + H
Sbjct: 33  HQGAQMGPEQQMWEPQMWHHHSHMPPHSVFAANNAEFPEFVH 74


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 673 HLRSQSFPMTQIFHWLTGYHLSHFPVHSLLAAFQQQLELYAH 548
           H  +Q  P  Q++     +H SH P HS+ AA   +   + H
Sbjct: 33  HQGAQMGPEQQMWEPQMWHHHSHMPPHSVFAANNAEFPEFVH 74


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 386 LFVTYVSVLPFITLS-HALIIICCFEWFYFH 297
           L   Y     FI  + H L+++C + ++Y H
Sbjct: 235 LLCIYYFYYAFILFTVHLLLLVCIYYFYYMH 265


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 108 APHHLQNPILQT*PS 152
           AP HLQ+P  QT PS
Sbjct: 82  APTHLQSPNTQTHPS 96


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 391 NREDEVDEVRAGARGRYGVNEVREGEIGRNGELVEFEKVD 510
           N +DE     + A G + V + R   +GR  ++V   K D
Sbjct: 147 NNDDEQYVWESSAGGSFTVTQDRGEPLGRGTKIVLHMKED 186


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = -3

Query: 192 ILPYKFWSGPITCWMVTFEGLGSVGDEGLI*KHN 91
           I P K W   +  +    EG        ++ KHN
Sbjct: 80  ITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHN 113


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = -3

Query: 192 ILPYKFWSGPITCWMVTFEGLGSVGDEGLI*KHN 91
           I P K W   +  +    EG        ++ KHN
Sbjct: 80  ITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHN 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,472
Number of Sequences: 336
Number of extensions: 2700
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)