Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0495.Seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   3.4  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   4.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.9  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.9  
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar...    25   7.8  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.8  

>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 625 TGYHLSHFPVHSLLAAFQQQ 566
           TG  +SHFP+H+ L A ++Q
Sbjct: 647 TGSSMSHFPLHAYLEAKERQ 666


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 386 LFVTYVSVLPFITLSHALIIICCFEWFYFH*IHYILVAKKNFYKSFVSMV 237
           +FV     LPF  +    I  CC   F F+   Y      N+Y SF+ +V
Sbjct: 350 IFVASFPALPFRLMREPTIGACCAMSFLFYITFY---CWDNYYYSFLQVV 396


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 601  PVHSLLAAFQQQLELYAHFYFITLHYYYSSNPPSR 497
            P+H L A F +QLE+ A   F T  Y       +R
Sbjct: 1349 PLHLLSATFPRQLEMVARQTFCTNFYVLRETSTAR 1383


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 601  PVHSLLAAFQQQLELYAHFYFITLHYYYSSNPPSR 497
            P+H L A F +QLE+ A   F T  Y       +R
Sbjct: 1349 PLHLLSATFPRQLEMVARQTFCTNFYVLRETSTAR 1383


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 676 IHLRSQSFPMTQIFHWLTGYHLSHFP 599
           +HLRS+S P++   H    Y  +H P
Sbjct: 155 LHLRSESAPISLPIHLYKSYSYNHSP 180


>SPAC8C9.10c |||ribosome biogenesis protein
           Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 574 ERRLIENELENGTNDSRLTNGKSGSWENFETLS 672
           ERR ++  L+   ND+   + KS  WE   T+S
Sbjct: 48  ERRKMKFSLDGLVNDADDDSQKSSKWEQSSTMS 80


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 311  WFYFH*IHYILVAKKNFYKSFVS 243
            W++   I Y+ + ++NF+ SFVS
Sbjct: 1011 WYHHRNIDYVDLLEQNFFLSFVS 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,912
Number of Sequences: 5004
Number of extensions: 42672
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)