Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0495.Seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               31   0.67 
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        29   4.8  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072)                  29   4.8  
SB_1232| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    28   8.3  
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1)                      28   8.3  

>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 640 IFHWLTGYHLSHFPVHSLLAAFQQQLELYAHFYFITLHYYYSSNPPS 500
           + H    YH  H P  SL ++      +      ITLH++Y  +PPS
Sbjct: 62  VHHHYHHYHHHHHPPSSLSSSASSANIIIIIISIITLHHHYHHHPPS 108


>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 556 IVRAVVERRLIENELENGTNDSRLTNGKSGSWENFETLS 672
           IVR + ER ++EN +  G  D R+  GK    EN +  S
Sbjct: 85  IVREISERDVVENNVFTGEEDERVAQGKPELQENCQLSS 123


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 586  IENELENGTNDSRLTNGKSGSWENFETLSGFHFLKK 693
            ++N LE  +    + +G  G W+  E +SG H  K+
Sbjct: 914  MKNLLEFASRFDEIVSGMEGKWKELEQMSGMHRTKE 949


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 343 DKVMKGRTLT*VTNKDNREDEVDEVRAGARGRYGVNEVREGEIGRNGELVEFEK 504
           D  +KG TL   T+ DN +D    +     GR G +  +   I + G LV+  K
Sbjct: 702 DANLKGTTLASTTDSDNLQDRFGTISTEI-GRNGADMGKAANILKEGMLVDISK 754


>SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072)
          Length = 416

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 586 IENELENGTNDSRLTNGKSGSWENFETLSGFHFLKK 693
           ++N LE  +    + +G  G W+  E +SG H  K+
Sbjct: 99  MKNLLEFASRFDEIVSGMEGKWKELEQMSGMHRTKE 134


>SB_1232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 589 ENELENGTNDSRLTNGKSGSWENFETLSGFH 681
           ++E +N    S  TNG +G WEN +   G H
Sbjct: 167 DDEFQNAEELSDFTNGSNGFWENID--DGIH 195


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 88  LHYNYIADSFNTFTPLYNFYLYISYKT 8
           +H++Y+   F+ F   ++ Y YI Y+T
Sbjct: 78  MHHSYVMKYFHLFARHFDLYKYIRYRT 104


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 82  YNYIADSFNTFTPLYNFYL 26
           YNY  D +N +  +YN+YL
Sbjct: 546 YNYYLDVYNYYLDIYNYYL 564



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 82  YNYIADSFNTFTPLYNFYLYISYK 11
           YNY  D +N +  +YN+YL +  K
Sbjct: 588 YNYYLDVYNYYLDVYNYYLDVYNK 611


>SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1)
          Length = 122

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 82 YNYIADSFNTFTPLYNFYL 26
          YNY  D +N +  +YN+YL
Sbjct: 9  YNYYLDVYNYYLDIYNYYL 27



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 82  YNYIADSFNTFTPLYNFYLYISYK 11
           YNY  D +N +  +YN+YL +  K
Sbjct: 72  YNYYLDVYNYYLDVYNYYLDVYNK 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,747,854
Number of Sequences: 59808
Number of extensions: 281378
Number of successful extensions: 545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)