Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0494.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   1.6  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   1.6  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   3.6  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   4.8  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   6.3  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   6.3  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   8.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.4  
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    25   8.4  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 128 VKFNKSGRKIFSLMNLTHVTIVYLTRAKYLFKKVLLNSL 12
           + F K   ++F   N  + TI+Y TR K    + LLNSL
Sbjct: 344 LSFLKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSL 382


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 347 HRIPGRRLDLRVKFWVPPQLLINE--PTRH 430
           H+   R L+L + +W+P ++L+N   PT++
Sbjct: 263 HKGYNRNLELILSYWIPTRILVNHQLPTKN 292


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
            homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +2

Query: 332  NPLDPHRIPGRRLDLRVKFWV 394
            NP++P+++  + LD+ V+ W+
Sbjct: 941  NPVEPNKLSEKELDMTVEQWI 961


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 246 DRLRSVPRQTISVCACAQDQAPEDGLTCGTPSI 344
           D +  +P Q +  C C  +  P  G+  G P I
Sbjct: 378 DGISYLPGQKLPNCVCLNEDHPSPGVGRGAPEI 410


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 299 LGTRADRNSLPRHRSQSVAYLLKALLTNRIW 207
           LGT A+RN    +    + Y+L   +T + W
Sbjct: 555 LGTFAERNFQTIYHPNKIVYMLPLNITQKYW 585


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 236 EGMRQIEIGAEADYFGLRVCPGSGPGRWLNL 328
           E   QIE+  +A   G +VCP S P  WL L
Sbjct: 690 EDKEQIELARDAYLAGTKVCPYSIP-LWLLL 719


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 301 SWAHAQTEIVCLGTDLNLSHTFSRH 227
           SW +AQ  ++ +G + N  + F RH
Sbjct: 71  SWTYAQLRVMRVGGNENARNYFKRH 95


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 390 QNLTRRSSRRPGMRCGSRGFRKLSHLPGPDPGHTRRPK*SASAPISICRIPS 235
           +N TR+S +    +  SRG RK       DP     P  S   P     +PS
Sbjct: 153 RNATRKSKKPSASKDTSRGVRKSKAGAPSDPSSVHAPS-SLEKPAGTGDLPS 203


>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 101 IFSLMNLTHVTIVYLTRAKYLFKKVLL 21
           I  ++NL HVT+V L  A  + + VLL
Sbjct: 40  ILGIVNLFHVTLVVLFSALTIIEGVLL 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,223
Number of Sequences: 5004
Number of extensions: 41190
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)