Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0494.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0497 + 16566601-16566696,16567026-16567102,16567903-165680... 32 0.22
01_01_1177 - 9378230-9378301,9378385-9378498,9379641-9379786,938... 31 0.68
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072... 30 0.90
07_03_1257 - 25241194-25242018 29 2.1
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 2.7
06_03_0905 + 25843547-25844314 29 2.7
03_03_0249 + 15832086-15833261 28 3.6
03_05_1166 - 30876802-30876899,30877233-30878685 28 4.8
04_04_0756 - 27817846-27819224,27819961-27820093,27820440-278205... 27 6.3
01_06_0238 - 27774546-27775418 27 6.3
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 27 8.4
06_02_0248 + 13468100-13468336,13468426-13468569,13469044-134698... 27 8.4
05_05_0152 + 22762994-22763326,22763857-22763989,22764281-227643... 27 8.4
03_01_0451 + 3461229-3461561,3462043-3462290,3462425-3462716,346... 27 8.4
>04_03_0497 +
16566601-16566696,16567026-16567102,16567903-16568047,
16568265-16568309,16568338-16569294,16569603-16569896,
16571129-16571242,16571826-16571913,16571995-16572050,
16572250-16572304,16572417-16572460
Length = 656
Score = 32.3 bits (70), Expect = 0.22
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 243 CDRLRSVPRQTISVCACAQDQAPEDGLTCG---TPSIRTAYPD 362
CD L+ PR AQ+Q PE ++ G +P IRT PD
Sbjct: 496 CDILQGAPRSPKQNVGSAQEQRPEQSMSQGAARSPMIRTPIPD 538
>01_01_1177 -
9378230-9378301,9378385-9378498,9379641-9379786,
9380004-9380086,9381178-9381233,9381619-9381822,
9381914-9382159
Length = 306
Score = 30.7 bits (66), Expect = 0.68
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 PRIRPRKMA*LAEPPRS-APHTRTTARPPRQVLGAPSAAHQRADEASVRLAGQTRPD*RQ 471
PR+ P A A P S +PH R ARP AP+ A A + R RPD
Sbjct: 10 PRVSPDARAMFATLPASPSPHLRLAARPRALSASAPTTAAVAATKQ--RFLAPPRPDPAA 67
Query: 472 TSSC 483
C
Sbjct: 68 PGGC 71
>04_04_1073 -
30606472-30606515,30606897-30606988,30607152-30607243,
30607362-30607469,30607614-30607748,30607826-30607871,
30608320-30608420,30608512-30608649,30608721-30608819,
30608920-30609036,30609941-30610102,30610271-30610330,
30611120-30611216,30611238-30611296,30611364-30611480,
30611922-30612020,30612115-30612180,30612405-30612542,
30612659-30612742,30612820-30612892,30612937-30612992,
30613074-30613182,30613253-30613335,30613406-30613489,
30613679-30613750,30613827-30613904,30613984-30614067,
30614142-30614212,30614497-30614566,30614866-30614955,
30615046-30615177,30615250-30615350,30615634-30615691,
30615762-30615878,30617981-30618133
Length = 1094
Score = 30.3 bits (65), Expect = 0.90
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 287 RVCPGSGPGRWLNLRNPLDPHRIPGRRLDLR-VKFWVPPQLLINEPTRHQFDLQAK 451
R G G G W ++ + DP IP + + +K W L++N R ++ L K
Sbjct: 15 RSSSGGGGGSWGSIGSAADPFDIPAKGAPVESLKKWRQAALVLNASRRFRYTLDLK 70
>07_03_1257 - 25241194-25242018
Length = 274
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 259 RCRGRLFRSARVPRIRPRKMA*LAEPPRSAPHTRTTARPPRQVLGAPSAA 408
RCR L + R PR++ PR TT +PPR + P+ A
Sbjct: 72 RCRTTLASTTTTRRRPPRRLHSRPRHPRGRTTASTTPQPPRPLPRQPTVA 121
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 286 ARVPRIRPRKMA*LAEPPRSAPHTRTTA-RPPRQVLGAP 399
AR+P + P + PP+ TR A R P V+G P
Sbjct: 178 ARLPELAPAASPARSSPPKPTAKTRRRATRTPPSVVGGP 216
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 334 PPRSAPHTRTTARPPRQVLGAPSAAHQRADEASVRLAGQTR 456
PPR +P +T PPR+ +PS A +R S +TR
Sbjct: 201 PPRRSPSPASTLTPPRR---SPSPASRRMSTGSTPALNRTR 238
>06_03_0905 + 25843547-25844314
Length = 255
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = -2
Query: 360 PGMRCGSRGFRKLSHLPGPDPGHTRRPK*SASAPISICRIPSQGTLDQSHLGPP*FP 190
P C K SH P P PGH + PK P PS T + PP P
Sbjct: 31 PECDCDKPKHPKPSH-PSPSPGHPKGPKNPTPRPPKGPTYPSPVTRPPPLVAPPKVP 86
>03_03_0249 + 15832086-15833261
Length = 391
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 328 AEPPRSAPHTR--TTARPPRQVLGAPSAAHQRADEAS 432
AEPPR AP R + PP APS A + D A+
Sbjct: 200 AEPPRGAPLRRQLSAPMPPPAPSPAPSTARRSLDSAT 236
>03_05_1166 - 30876802-30876899,30877233-30878685
Length = 516
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 312 PGPDPGHTRRPK*SASAPISIC 247
P +P HTR+P+ S P S C
Sbjct: 239 PSGEPWHTRKPRFSKETPASFC 260
>04_04_0756 -
27817846-27819224,27819961-27820093,27820440-27820519,
27821378-27821609
Length = 607
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 334 PPRSAPHTRTTARPPRQVLGA 396
PP S+PH R +RPP L A
Sbjct: 11 PPSSSPHRRCLSRPPTSQLTA 31
>01_06_0238 - 27774546-27775418
Length = 290
Score = 27.5 bits (58), Expect = 6.3
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 193 KSRWTQMRLVKSALRRYATD*DRCRGRLFRSARVPRIRPRKMA*LAEPPRSAPHTRT-TA 369
+S W + + ++ A+ + +++RS R P +A PP +A ++T A
Sbjct: 135 RSGWIMVEIGLKYAQQNASSDELVLCKVYRSPRAPPAAAAANKSMAAPPPTATKSKTEEA 194
Query: 370 RPPRQVLGAPSAAHQRADEASVRLA 444
PP + AA Q D +R A
Sbjct: 195 TPPPDDVKPVVAAAQTPDTKILRAA 219
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 27.1 bits (57), Expect = 8.4
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = -2
Query: 372 SSRRPGMRCGSRGFRKLSHLPGPDPGHTRRPK*SASAPISICRIPSQGTLDQSHLGPP*F 193
S R P + S FR LS+L P+P PK SAS +PS + GPP
Sbjct: 2 SRREPAV---SSPFRDLSNLRTPNPRAPPNPKSSASKEEP---LPSATPTTRRRRGPPPP 55
Query: 192 PR 187
PR
Sbjct: 56 PR 57
>06_02_0248 +
13468100-13468336,13468426-13468569,13469044-13469808,
13470272-13470564,13470642-13470833,13471151-13471229,
13471339-13471431,13471519-13471704
Length = 662
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 296 PGSGPGRWLNLRNPLDPHRIPGRRL----DLRVKF-WVPPQLLINEPTRHQFDLQA 448
PGSG + +P DPH P ++ D V +VPP+ ++N P R + QA
Sbjct: 42 PGSG-----SYHSPSDPHPSPAKKRKGGSDYEVDSDYVPPESVLNAPRRSKRKAQA 92
>05_05_0152 +
22762994-22763326,22763857-22763989,22764281-22764362,
22764786-22764939,22765028-22765162
Length = 278
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 285 RPK*SASAPISICRIPSQGTLDQSHLGPP 199
+P S S ++ R+PS+ D S GPP
Sbjct: 76 QPSPSPSPSVAFVRLPSEAPADASSTGPP 104
>03_01_0451 +
3461229-3461561,3462043-3462290,3462425-3462716,
3463057-3463209,3463288-3463674
Length = 470
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 301 IRPRKMA*LAEPPRSAPHTRTTARPPRQVLGAPSAAHQRADEASVRLAGQTRP 459
+ PR + L P R AP R RPP AA RA +V A + P
Sbjct: 6 LNPRHVLPLPLPRRRAPRPRVLHRPPPPRRRLEGAARPRAVAVAVNEARRRWP 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,514
Number of Sequences: 37544
Number of extensions: 308654
Number of successful extensions: 957
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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