Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0494.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               55   3e-08
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   9e-08
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)                     31   0.70 
SB_6928| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)           28   3.7  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_15581| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)          28   3.7  
SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)                 28   4.9  
SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               28   4.9  
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)                   28   4.9  
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)                  27   6.5  
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               27   8.6  

>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
 Frame = +2

Query: 266 EADYFGLRVCPGSGPGRWLNLRNP----LDPHRIPGR--RLDLRVKFWVPPQLLINEPTR 427
           E +YFGL+ C       WLNLRNP    L PH +PG+  RL L VKF+V P+ L  E TR
Sbjct: 38  EKNYFGLKYCVND-TNVWLNLRNPVLTQLRPH-LPGKPYRLRLEVKFFVAPKELQQEETR 95

Query: 428 HQFDLQAKLDLTEGR 472
            QF    K  ++EG+
Sbjct: 96  WQFYFCLKNQISEGK 110



 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 216 IGQECLEKVCDRLRSVPRQTISVCACAQD 302
           +GQE L+KVCD L+   +    +  C  D
Sbjct: 22  LGQEVLDKVCDELKIKEKNYFGLKYCVND 50


>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
 Frame = +2

Query: 245 RQIEIGAEADYFGLRVCPGSGPGRWLNLRNPLDPHRIP---GRRLDLRVKFWVPPQLLIN 415
           R+ ++ AE DYFGLR    +G  RW+NLRN L     P   G  L+LRVK++V    L+ 
Sbjct: 442 RKHDLSAEVDYFGLRYVQ-AGDARWINLRNSLREQLSPGVLGSALELRVKYFVNYSQLLL 500

Query: 416 EPTRH 430
           E TRH
Sbjct: 501 EETRH 505


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +1

Query: 235  RRYATD*DRCRGRLFRSARVPRIRPRKMA*LAEPPRSAPHTRTTARPPRQVL---GAPSA 405
            RR   D  R RG   RS   P+  PR+ +  A PPR     R+ +R P++ +   G+PS 
Sbjct: 1076 RRTPEDRRRSRGSR-RSPSPPKREPRRRSPSASPPRREARKRSLSRSPKREVRRRGSPSP 1134

Query: 406  AHQRADEASVRLAGQTRP 459
            +  R     V +  +  P
Sbjct: 1135 SEGRKKPVDVEMGEEEAP 1152


>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +2

Query: 263 AEADYFGLR-VCPGSGPGRWLNLRNPLDPH--RIPGRRLDLRVKFWVP-PQLLINEPTRH 430
           AE +YFGLR +    G   WL     +     + P       VKF+   P  L  + TR+
Sbjct: 44  AEKEYFGLRYIDEKDGQFNWLEGDRSIKRQMGKAP-LHFYFAVKFYPENPTTLREDITRY 102

Query: 431 QFDLQAKLDLTEGRL 475
           QF LQ + DL +GR+
Sbjct: 103 QFVLQLREDLLKGRI 117


>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
          Length = 541

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = +1

Query: 235 RRYATD*DRCRGRLFRSARVPRIRPRKMA*LAEPPRSAPHTRTTARPPRQVLGAPSAAHQ 414
           RRY T   R RGR+ R    P+ RP+        P++ P TR   RP  +    P    +
Sbjct: 228 RRYLTG--RRRGRVTRPKTRPKTRPKTR------PKTRPKTRPKTRPKTRPKTRPKTRPK 279

Query: 415 RADEASVRLAGQTRPD*RQTSSCR 486
              +   +   +TRP  +  S  +
Sbjct: 280 TRPKTRPKTRPKTRPKTKSKSKSK 303



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +1

Query: 235 RRYATD*DRCRGRLFRSARVPRIRPRKMA*LAEP---PRSAPHTRTTARPPRQVLGAPSA 405
           RRY T   R RGR+ R     R R R       P   P++ P TR   RP  +    P  
Sbjct: 215 RRYLTG--RRRGRVTRRYLTGRRRGRVTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKT 272

Query: 406 AHQRADEASVRLAGQTRPD*RQTSSCRLTSR 498
             +   +   +   +TRP  R  +  +  S+
Sbjct: 273 RPKTRPKTRPKTRPKTRPKTRPKTKSKSKSK 303


>SB_6928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 146 HFERKYVKFNKSGRKIFSLMNLTHVTIVYLTRAKYLFKKVLLNSLCEM 3
           H  ++Y++F KS   I SL N   V+ VY    +YL      NS+  +
Sbjct: 41  HIGQQYLQFTKSANSITSLPNRPTVSPVYQIGQQYLQFTKSANSISSL 88


>SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)
          Length = 334

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 209 WVHLDFQDHRIRLTD*PHFGQHFERKYVKFNKSGRKI-FSLMNLTHVTIV 63
           W+      H  RL + P  GQH      K+NK G  +   L  +T +T V
Sbjct: 171 WIEPGHNPHHARLNNQPVGGQHIGAWAAKYNKKGEYLEVDLGQVTWITHV 220


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 126  YVFSFEMLTKMWLVSQPNSVILEIKVDPNAIGQECLEKVCDRLRSVPRQTISVCACAQDQ 305
            Y    E LT+M    + N +  +   DP+ +G+  +EK       VP+  I+    A   
Sbjct: 2704 YPTELEKLTRM----KDNLIKAKTSEDPSRLGKAIIEKAIKEYVPVPKMDIAFAISANAT 2759

Query: 306  APEDGL 323
            + ED L
Sbjct: 2760 SSEDRL 2765


>SB_15581| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)
          Length = 133

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 209 WVHLDFQDHRIRLTD*PHFGQHFERKYVKFNKSGRKI-FSLMNLTHVTIV 63
           W+      H  RL + P  GQH      K+NK G  +   L  +T +T V
Sbjct: 17  WIEPGHNPHHARLNNQPVGGQHIGAWAAKYNKKGEYLEVDLGQVTWITHV 66


>SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)
          Length = 633

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 334 PPRSAPHTRTTARPPRQV 387
           PP S P ++TT  PPRQ+
Sbjct: 365 PPESKPVSKTTPAPPRQI 382


>SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 214 AFGSTLISKITELG*LTNHILVNISNENT*NLI 116
           A GS L S    LG + NH+ + + ++ T NL+
Sbjct: 4   AIGSQLFSPFRALGYIANHVPLAVQSQGTENLV 36


>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 659

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 295 PRIRPRKMA*LAEPPRSAP-HTRTTARPPR 381
           PR+ P+    LA PP+ +P H +  A PPR
Sbjct: 486 PRLSPKHRQLLATPPQLSPKHRQLLAPPPR 515


>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
          Length = 1389

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 168 SQPNSVILEIKVDPNAIGQECLEKVCDRLRSVPRQTISVCACAQDQAPEDGLTCGTPSIR 347
           S+P +  L++   PN + +   + + + +  +  +  S      +   E+G +CG PS+R
Sbjct: 371 SKPATSNLDVATVPNCVNKNVSDNITEEISDISSELDSGSKSEPNSGDEEGGSCG-PSLR 429


>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
          Length = 1466

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 168  SQPNSVILEIKVDPNAIGQECLEKVCDRLRSVPRQTISVCACAQDQAPEDGLTCGTPSIR 347
            +QP SV  E    P+   +E  + +CD L+   +Q     A   D  P +      P++R
Sbjct: 1101 AQPQSVESEHPETPSDAAKESSQALCDLLQIGRKQDSKEAAKPPDSTPGEDAAQKEPAMR 1160

Query: 348  TAYPDD 365
                D+
Sbjct: 1161 AVSLDE 1166


>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +1

Query: 280 RSARVPRIRPRKMA*LAEPPRSAPHTRTTARPPRQVLGAPSAAHQRADEASVRLAGQTRP 459
           RSARV R     +A  +E   S+   R  AR P  V+   +A HQ +     RL  +   
Sbjct: 327 RSARVGRQSAAAVAVSSEAGGSSTRRRQPAR-PEVVVNGDAAPHQYSTRRRARLVSEETN 385

Query: 460 D 462
           D
Sbjct: 386 D 386


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +1

Query: 304 RPRKMA*LAEPPRSAPHTRTTARPPRQVLGAPS-----AAHQRADEASVRLAGQTRP 459
           +P   A    PP S P T   +R PR++   PS     +  Q +D+ + RL+ +  P
Sbjct: 534 KPPSSAGHVNPPPSRPQTHHPSRLPRKISRDPSTDSTLSGDQESDQDAHRLSQEVYP 590


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,581
Number of Sequences: 59808
Number of extensions: 348632
Number of successful extensions: 840
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)