Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0494.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18680.1 68418.m02217 F-box family protein / tubby family pro...    28   4.0  
At3g53320.1 68416.m05883 expressed protein                             28   4.0  
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa...    28   4.0  
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ...    27   5.3  
At1g05250.1 68414.m00531 peroxidase, putative similar to peroxid...    27   5.3  
At1g05240.1 68414.m00530 peroxidase, putative similar to peroxid...    27   5.3  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    27   7.0  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    27   7.0  
At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containi...    27   9.3  
At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C...    27   9.3  

>At5g18680.1 68418.m02217 F-box family protein / tubby family
           protein similar to phosphodiesterase (GI:467578) [Mus
           musculus]; similar to Chain A, C-Terminal Domain Of
           Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
           contains Pfam PF00646: F-box domain and Pfam PF01167:
           Tub family
          Length = 389

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 345 GSRGFRKLSHLPGPDPGHTRRPK*SASAPISICRIPSQGTLDQSHLGP 202
           GSRG RK+  L    P  T  P+  AS P     + ++ TL +S   P
Sbjct: 233 GSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGTRSTLSRSQSKP 280


>At3g53320.1 68416.m05883 expressed protein
          Length = 553

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = -2

Query: 498 ATRKPATRSLPSVRSSLACKSN*CLVGSLMSS*GGTQNLTRRSSRRPGMRCGSRGFRKLS 319
           A++   T S  S+ S  +  S+     S+ S      + +R SS+    R  SRG     
Sbjct: 315 ASKNEMTSSCSSLESCASASSSASHKPSIDSIKKKNDSSSRLSSQPLANRSTSRGIMGQP 374

Query: 318 HLPGPDPGHTRRPK*SASAP 259
            +P      T +PK S+S P
Sbjct: 375 RIPPQQTNKTSKPKLSSSVP 394


>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 381

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 299 GSGPGRWLNLRNPLDP 346
           G GPG WLN+R   +P
Sbjct: 73  GGGPGNWLNVRQTTEP 88


>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 812

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 191 GNQGGPKCDWSRVP*EGMRQIEIGAEADYFGLRVCPGSGPGRWLNLRN 334
           G  G P C++ R P  G  ++      +++   +C  S PG++   +N
Sbjct: 193 GFAGHPMCEFCRNPFYGDNELYTHMSTEHYTCHLCQRSQPGQYEYYKN 240


>At1g05250.1 68414.m00531 peroxidase, putative similar to
           peroxidase; peroxidase ATP11a [Arabidopsis thaliana]
           gi|1546688|emb|CAA67334
          Length = 325

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 67  IVTCVKFINENILRPDLLNFTYFRSKC*PKCG*SVNLIL*SWKSRWTQMRLVKSALRRYA 246
           +V  +  +  ++  P LL+  Y+RSKC PK    V  +   + SR  Q  L    LR + 
Sbjct: 9   LVVLLSVVGVSVAIPQLLDLDYYRSKC-PKAEEIVRGVTVQYVSR--QKTLAAKLLRMHF 65

Query: 247 TD 252
            D
Sbjct: 66  HD 67


>At1g05240.1 68414.m00530 peroxidase, putative similar to
           peroxidase; peroxidase ATP11a [Arabidopsis thaliana]
           gi|1546688|emb|CAA67334
          Length = 325

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 67  IVTCVKFINENILRPDLLNFTYFRSKC*PKCG*SVNLIL*SWKSRWTQMRLVKSALRRYA 246
           +V  +  +  ++  P LL+  Y+RSKC PK    V  +   + SR  Q  L    LR + 
Sbjct: 9   LVVLLSVVGVSVAIPQLLDLDYYRSKC-PKAEEIVRGVTVQYVSR--QKTLAAKLLRMHF 65

Query: 247 TD 252
            D
Sbjct: 66  HD 67


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 337 PRSAPHTRTTARPPRQVLGAPSAAHQRADEASVRLAGQTRP 459
           PR+ P T  T RPP     +P AA  RAD   +  A  T P
Sbjct: 218 PRAEPPTLDTPRPP-----SPRAASLRADPPRLDAARPTTP 253



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 307 PRKMA*LAEPPRSAPHTRTTARPPRQVLGAP 399
           PR  +  A+PPR      TT RPP  +  AP
Sbjct: 233 PRAASLRADPPRLDAARPTTPRPPSPLADAP 263


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 337 PRSAPHTRTTARPPRQVLGAPSAAHQRADEASVRLAGQTRP 459
           PR+ P T  T RPP     +P AA  RAD   +  A  T P
Sbjct: 217 PRAEPPTLDTPRPP-----SPRAASLRADPPRLDAARPTTP 252



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 307 PRKMA*LAEPPRSAPHTRTTARPPRQVLGAP 399
           PR  +  A+PPR      TT RPP  +  AP
Sbjct: 232 PRAASLRADPPRLDAARPTTPRPPSPLADAP 262


>At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1064

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 126 YVFSFEMLTKMWLVSQPNSVILEIKVDPNAIGQECLEKVC 245
           YV   +MLT+  L+S+    I E+ + P+A+    L   C
Sbjct: 832 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 871


>At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; identical to protein phosphatase 2C (GI:4587992)
           [Arabidopsis thaliana]
          Length = 390

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 295 PRIRPRKMA*LAEPPRSAPHTRTTARPPRQVL 390
           PR  P K+  +A PPR    T+TT      VL
Sbjct: 56  PRSSPPKLTMVACPPRKPKETKTTGSDSETVL 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,651,372
Number of Sequences: 28952
Number of extensions: 229190
Number of successful extensions: 646
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)