Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0493.Seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    31   0.16 
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   3.4  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    26   4.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   5.9  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   5.9  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    25   7.8  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 510 VMPNTPALVKEGALPLVVVLKPQRKTHN*RHSS--SRRWGNCDEVPEYQMDAITALSGSG 683
           +MPNT + ++E     V+   P     + + +       G   ++PE  +DA TA+ GSG
Sbjct: 133 IMPNTASRIRESMS--VICPGPNATEEDIKFAEWVFNGIGRSMKLPEKLIDAATAVCGSG 190

Query: 684 PAYV 695
           PA+V
Sbjct: 191 PAFV 194


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 128 LNMLKLPLIEAMKIGFIGGGRLAFA--LANGFISAGLAKPDEITVAVILPMLPAP 286
           L++LK  +  ++    + GGR  F   L N F+SA  +K DE+   ++L +   P
Sbjct: 235 LDLLKSKVGNSIYSQLVDGGRKLFLPKLRNWFVSAIRSKHDELIHLILLVLANLP 289


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 315 RCSSQALKSFGAGNIGRMTATVISSGFARPAEIKPFAKANASLPPP 178
           R   + +   G   I ++ A V  S  A    I+P +KA+AS P P
Sbjct: 217 RIHGKEIPFLGESEIPKLLANVEPSANAHGLGIEPASKASASSPNP 262


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +2

Query: 149 LIEAMKIGFIGGGRLAFALANGFISAGLAKPDEITVAVILPMLPAPKLFRAWELQRYLKI 328
           L++ + I   GG  L  AL + F+S        +T+ + L  L + +L+  W+L+    +
Sbjct: 408 LVQVVAISGFGGASLMIALISDFLSV-------MTIHIHLLYLASSRLYN-WQLRVIYSL 459

Query: 329 YPWWRGLK 352
              +RG K
Sbjct: 460 LQLFRGKK 467


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +1

Query: 391 ALKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIL*CQTLRR 531
           A+K   N+P+ +NK F S A  + +A V S+L     V L  Q+LRR
Sbjct: 33  AVKNSGNVPTPRNKSFFSRA--LEMAEVTSSLSMLGAVAL-FQSLRR 76


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 498 SLRRQIRFDCSDSNSHGNGNEEFILRRRQVFYLFKSGYHDIGLDRY-YHHFRPLHHGYIF 322
           S + Q  F+  D N H N +EE   RR   +    + Y+D+  D Y Y   +  H    +
Sbjct: 42  SRKLQEYFEFWDRN-HENESEEDRARRIDGYKSVVNSYYDLATDLYEYGWSQSFHFSRFY 100

Query: 321 K*RCSSQAL 295
           K    +Q++
Sbjct: 101 KGEAFAQSI 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,334
Number of Sequences: 5004
Number of extensions: 54935
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)