Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0493.Seq
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0525 - 6886920-6887298,6888650-6888882                           29   4.7  
09_03_0094 + 12315923-12316237,12316347-12317504                       28   6.2  
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976...    28   8.1  

>04_01_0525 - 6886920-6887298,6888650-6888882
          Length = 203

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 152 IEAMKIGFIGGGRLAFALANGFISAGL-AKPDEITVAVILPMLP 280
           +++  + F+G   L+  L+N F++A    KP EI   +I P+LP
Sbjct: 87  VQSPNLSFLGTPTLS-RLSNSFLTASFRGKPPEIISGLIKPLLP 129


>09_03_0094 + 12315923-12316237,12316347-12317504
          Length = 490

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -3

Query: 300 ALKSFGAGNIGRMTATVISSGFARPA--EIKPFAK-ANASLPPPINPIFIA-SINGNF 139
           +++SF AGN     AT  ++  A+P   E++ FA+ A A L  P   + +A  + G+F
Sbjct: 190 SIRSFAAGNDAAAAATASTTTTAKPVRQELQEFAREAKAVLRVPSFQVMVAQGLTGSF 247


>12_01_0969 -
           9765114-9765664,9767963-9768512,9769507-9769561,
           9769918-9769980,9770547-9771325
          Length = 665

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 231 RPAEIKPFAKANASLPPPINPIFIASINGNFSMFKLH 121
           RP  ++P+A + AS PPP  P   A ++  F   + H
Sbjct: 23  RPPPVRPYASSAASPPPPPPPPASAYVHLPFCRKRCH 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,354,159
Number of Sequences: 37544
Number of extensions: 395390
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)