Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0493.Seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5443| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   8e-04
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      40   0.001
SB_56663| Best HMM Match : F420_oxidored (HMM E-Value=0)               35   0.055
SB_16028| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_58171| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_5443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +3

Query: 510 VMPNTPALVKEGALPLVVVLKPQRKTHN*RHSSSRRWGNCDEVPEYQMDAITALSGSGPA 689
           +M NTP   +EG   +      + + +   H      G C EV E  MD +TAL+G GPA
Sbjct: 119 MMLNTPVQFREGVTAMTFGKFAREEDYKDIHELMSSVGYCFEVDEDLMDVMTALTGGGPA 178

Query: 690 YV 695
           Y+
Sbjct: 179 YL 180



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 18/36 (50%), Positives = 25/36 (69%)
 Frame = +2

Query: 143 LPLIEAMKIGFIGGGRLAFALANGFISAGLAKPDEI 250
           + LI +M  GFIG G+ A A+A GF+SAG+ K  +I
Sbjct: 1   MSLISSM--GFIGAGKAATAMAKGFLSAGVIKASDI 34


>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +2

Query: 158 AMKIGFIGGGRLAFALANGFISAGLAKPDEITVAVI 265
           ++ +GFIGGG +A ALA GFIS+ + K + I  + +
Sbjct: 356 SLHVGFIGGGNMAIALAKGFISSKMVKSENIIASAL 391


>SB_56663| Best HMM Match : F420_oxidored (HMM E-Value=0)
          Length = 630

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = +3

Query: 510 VMPNTPALVKEGALPLVVVLKPQRKTHN*RHSSSRRWGNCDEVPEYQMDAITALSGSGPA 689
           VMPN P LV+ GA    +                   G  ++V E  + A+T LSGSGPA
Sbjct: 476 VMPNIPTLVRAGASAYALGHNAIGDDSETVKRLMSAVGYVEQVREKDVAAVTGLSGSGPA 535

Query: 690 Y 692
           Y
Sbjct: 536 Y 536


>SB_16028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 209 NGFISAGLAKPDEITVAVILPMLPAPKLFRAWELQRYLKIY 331
           + F  A LA  D +  AVILP++ A  L R W L  Y  ++
Sbjct: 52  SNFFLASLAVADLLVGAVILPVITAKTLMREW-LSTYSLVF 91


>SB_58171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 561 VVLKPQRKTHN*RHSSSRRWGNCDEVPEYQMDAI 662
           ++++P +K H  R  S      CDE   Y  D++
Sbjct: 95  LLIQPPKKNHKMRRHSDENLSPCDECGSYDCDSV 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,319,404
Number of Sequences: 59808
Number of extensions: 428399
Number of successful extensions: 1044
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)