Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0493.Seq
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14800.1 68418.m01736 pyrroline-5-carboxylate reductase ident...    41   0.001
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ...    31   0.73 
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff...    29   2.9  
At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative              27   9.0  

>At5g14800.1 68418.m01736 pyrroline-5-carboxylate reductase
           identical to pyrroline-5-carboxylate reductase SP:P54904
           from [Arabidopsis thaliana]
          Length = 276

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/45 (37%), Positives = 31/45 (68%)
 Frame = +2

Query: 128 LNMLKLPLIEAMKIGFIGGGRLAFALANGFISAGLAKPDEITVAV 262
           + +L +P  E+ K+GFIG G++A ++A G +++G+  P+ I  AV
Sbjct: 1   MEILPIPA-ESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAV 44



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +3

Query: 510 VMPNTPALVKEGALPLVVVLKPQRKTHN*RHSSSRRWGNCDEVPEYQMDAITALSGSGPA 689
           VMPNTPA V E A  + +      +            G   +  E   DA+T LSGSGPA
Sbjct: 125 VMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGLSGSGPA 184

Query: 690 YV 695
           Y+
Sbjct: 185 YI 186


>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
           contains similarity to glucan synthases
          Length = 1973

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -3

Query: 465 DSNSHGNGNEEFILRRRQVFYLFKSGYHDIGLDRYYHHFRP--LHHGYIFK*RCSSQALK 292
           D NS G G+EEF +RRR+     KS   +  L R YH ++   + HG  F    +SQ  K
Sbjct: 97  DRNSTGRGDEEFTVRRRKE----KSDVRE--LKRVYHAYKEYIIRHGAAFN-LDNSQREK 149

Query: 291 SFGAGNIGRMTATVISS 241
              A  I  +   V+ +
Sbjct: 150 LINARRIASVLYEVLKT 166


>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
            effector-related contains similarity to SEN1, a positive
            effector of tRNA-splicing endonuclease [Saccharomyces
            cerevisiae] gi|172574|gb|AAB63976
          Length = 1065

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 312  CSSQALKSFGAGN-IGRMTATVISSGFARPAEIK 214
            CSS  +K+FG+ N +G M ++V S+    P E++
Sbjct: 1011 CSSDVIKTFGSLNLVGEMLSSVPSNDSVEPLEVE 1044


>At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative
          Length = 268

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 618 WGNCDEVPEYQMDAITALSGSGPAYV 695
           +GN D+V E   D+I A + +G AYV
Sbjct: 104 FGNIDKVDELSEDSIKAATDTGKAYV 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,375
Number of Sequences: 28952
Number of extensions: 298220
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)