Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0491.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.6  
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz...    27   3.4  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   4.5  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.5  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   6.0  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.0  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.9  

>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 239 FFKDDETTIPNGQRSKSFQPNS 304
           FFKD E + PN   S+S  P+S
Sbjct: 273 FFKDTEMSTPNSNHSRSRTPSS 294


>SPCC1393.11 |||mitochondrial ribosomal protein subunit
           L20|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +1

Query: 181 KKKSWCTRRLQVHSSKTRDV--LQG*RNHDPQWSEEQIISAKFNYNGLLIGR 330
           K KS    R   H   + D+  +Q  R  DP       +S KFN   LLI R
Sbjct: 97  KSKSKGKLRFSTHQLSSEDIKSIQDLRTKDPNAWTTGTLSKKFNTTRLLISR 148


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 474 DIRQYNATFCIDSEFYFHVNKCAVTQSPS 388
           D++  N   CID +   H+   A T SP+
Sbjct: 214 DLKPENVLICIDQDALQHIEAPATTSSPT 242


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 463 LADVIDSDSWRLWP 504
           L  ++DSD+WR WP
Sbjct: 106 LKHLVDSDTWRRWP 119


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 497 NLQESESMTSANTMLPSVSTPNSIFMSISAQSRRAQAFSKI 375
           ++QE+ SMT  + +LPS     S+    + QSRRA   SK+
Sbjct: 128 HVQEAASMTQLSHLLPS-----SLINLSNGQSRRAMLASKL 163


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 500 HNLQESESMTSANTMLPSVSTPNSIFMSISAQSRRA 393
           HN   SE+++++N+ +PS++   S  M  S     A
Sbjct: 17  HNAWGSENISNSNSAIPSITNDVSFSMEASVWKENA 52


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 178 ERASCKAAGNPFNGDHLTF 122
           +R + K  GN F GDH  F
Sbjct: 21  KRRASKVVGNSFGGDHFNF 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,070
Number of Sequences: 5004
Number of extensions: 63828
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)