Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0490.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    28   1.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.6  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    27   3.8  
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz...    27   3.8  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    26   6.6  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.7  

>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 528 QPLIFYHGSHNLQGVRIDDIRQYNATFCIDSEFYFHVNKCAVTQSPS 388
           Q LI     H   G+   D++  N   CID +   H+   A T SP+
Sbjct: 196 QLLIALDYLHRECGIIHTDLKPENVLICIDQDALQHIEAPATTSSPT 242


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -3

Query: 518 SFITEATISKESESMTSANTMLPSVSTPNSIFMSISAQSRR----AQAFSKISNIRIV 357
           +F+T  T S  +    + NT +PS S  +SI  S++  S      ++AFS  S++ ++
Sbjct: 434 TFLTTITPSPSNSISYTNNTFIPSSSIKSSIVYSVTPTSAENYTSSEAFSTSSSLVVI 491


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 239 FFKDDETTIPNGQRSKSFQPNS 304
           FFKD E + PN   S+S  P+S
Sbjct: 273 FFKDTEMSTPNSNHSRSRTPSS 294


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 573 ESAAVTVVSSGTPVCQPLIFYHGSHNLQGVRIDDIRQYNATFCID 439
           E  A  + SS +P  + L F HG  NL+G + ++  +  A   ID
Sbjct: 161 EEIASKLFSSVSPTHETLQFDHGLQNLEGFQANEHPEMFADHSID 205


>SPCC1393.11 |||mitochondrial ribosomal protein subunit
           L20|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +1

Query: 181 KKKSWCTRRLQVHSSKTRDV--LQG*RNHDPQWSEEQIISAKFNYNGLLIGR 330
           K KS    R   H   + D+  +Q  R  DP       +S KFN   LLI R
Sbjct: 97  KSKSKGKLRFSTHQLSSEDIKSIQDLRTKDPNAWTTGTLSKKFNTTRLLISR 148


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/68 (22%), Positives = 28/68 (41%)
 Frame = -2

Query: 573 ESAAVTVVSSGTPVCQPLIFYHGSHNLQGVRIDDIRQYNATFCIDSEFYFHVNKCAVTQS 394
           ES A  V SS   +C+ ++     H     +  D+  Y+    +  +  FH     + + 
Sbjct: 126 ESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNLDVGSYDGILSVGGDGLFHEVINGLGER 185

Query: 393 PSFLQDFK 370
             +L+ FK
Sbjct: 186 DDYLEAFK 193


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 178 ERASCKAAGNPFNGDHLTF 122
           +R + K  GN F GDH  F
Sbjct: 21  KRRASKVVGNSFGGDHFNF 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,712
Number of Sequences: 5004
Number of extensions: 67978
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)