Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0490.Seq
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0) 95 7e-20
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28) 95 7e-20
SB_54973| Best HMM Match : RVP (HMM E-Value=2.6) 29 3.0
SB_17353| Best HMM Match : Transposase_11 (HMM E-Value=1.3) 29 5.3
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17) 28 9.2
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21) 28 9.2
>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
Length = 278
Score = 94.7 bits (225), Expect = 7e-20
Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Frame = +1
Query: 259 HDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFG 438
HDP W+ EQ + A F G IG+ E+D M ++ I IFEI+E+AWA D AL+DMKIEFG
Sbjct: 134 HDPFWTYEQCVEAAFEIGGRKIGKHELDIMSESAIAIFEIIERAWATVDVALVDMKIEFG 193
Query: 439 VDTE-GSIVLADVIDSDSLEIVASVIKD*WLTNRCTGTHNGDCS*F*TQSKRNFAWVKDQ 615
V+ + G ++LADV+D+DS I S K + Q K+N+AWV +
Sbjct: 194 VNRKTGELMLADVVDNDSWRIWPSGDKRLMRDKQVYRNLPEVTPEALEQVKKNYAWVAGE 253
Query: 616 LDS*SRGSTTKLSXLMGS 669
++ + + MGS
Sbjct: 254 SQKLNKHNPGHVVVFMGS 271
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/64 (65%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Frame = +2
Query: 68 GIKTAFVKIASET--AFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETF 241
G+KT FVK AF+ CEMIP+E V RR+ATGSFLKR PGV EG+RFTPPKQE F
Sbjct: 68 GLKTHFVKRCESDPEAFIGIACEMIPLEVVCRRIATGSFLKRYPGVKEGYRFTPPKQEFF 127
Query: 242 FKDD 253
KDD
Sbjct: 128 LKDD 131
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 510 DKRLMVDKQVYRNSQR*LQLILDTVK 587
DKRLM DKQVYRN L+ VK
Sbjct: 219 DKRLMRDKQVYRNLPEVTPEALEQVK 244
>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
Length = 265
Score = 94.7 bits (225), Expect = 7e-20
Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Frame = +1
Query: 259 HDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFG 438
HDP W+ EQ + A F G IG+ E+D M ++ I IFEI+E+AWA D AL+DMKIEFG
Sbjct: 44 HDPFWTYEQCVEAAFEIGGRKIGKHELDIMSESAIAIFEIIERAWATVDVALVDMKIEFG 103
Query: 439 VDTE-GSIVLADVIDSDSLEIVASVIKD*WLTNRCTGTHNGDCS*F*TQSKRNFAWVKDQ 615
V+ + G ++LADV+D+DS I S K + Q K+N+AWV +
Sbjct: 104 VNRKTGELMLADVVDNDSWRIWPSGDKRLMRDKQVYRNLPEVTPEALEQVKKNYAWVAGE 163
Query: 616 LDS*SRGSTTKLSXLMGS 669
++ + + MGS
Sbjct: 164 SQKLNKHNPGHVVVFMGS 181
Score = 71.7 bits (168), Expect = 6e-13
Identities = 32/41 (78%), Positives = 35/41 (85%)
Frame = +2
Query: 131 MIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFFKDD 253
MIP+E V RR+ATGSFLKR PGV EG+RFTPPKQE F KDD
Sbjct: 1 MIPLEVVCRRIATGSFLKRYPGVKEGYRFTPPKQEFFLKDD 41
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 510 DKRLMVDKQVYRNSQR*LQLILDTVK 587
DKRLM DKQVYRN L+ VK
Sbjct: 129 DKRLMRDKQVYRNLPEVTPEALEQVK 154
>SB_54973| Best HMM Match : RVP (HMM E-Value=2.6)
Length = 255
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 188 NPGVPEGFRFTPPKQETFFKDDETTIPNGQRSKSFQPNSIITVF 319
NP + RF P ++ TFF D+ + G K F P ++ F
Sbjct: 53 NPNLDNNDRFRPVRR-TFFSDEAIQVNEGPPRKCFPPTEVMFNF 95
>SB_17353| Best HMM Match : Transposase_11 (HMM E-Value=1.3)
Length = 200
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 277 LTIGDRGFVILEERLLFWRSEPEAFWYTR 191
L + DRGF I E L+F+R+EP +TR
Sbjct: 109 LVMADRGFTI-NESLMFYRAEPAIPAFTR 136
>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 522 LIFYHGSHNLQGVRIDDIRQYNATFCIDSEFY--FHVNKCAVT 400
++++H HN V D + Y+ C++++F +H N C T
Sbjct: 1 ILYHHTYHNNICVNTDFLHVYHNNICVNTDFLHAYHNNICVNT 43
>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 188 NPGVPEGFRFTPPKQETFFKDDETTIPNGQRSKSFQPNSII 310
NP + RF P + TFF D+ + G K F P ++
Sbjct: 319 NPNLDNNDRFRPVSR-TFFSDEVIQVDEGPPRKCFPPTEVM 358
>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
Length = 1084
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 19 PCSDECLEPYKYNHHF 66
PC +E PYK N HF
Sbjct: 845 PCKEEACAPYKQNEHF 860
>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
Length = 491
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 479 SMTSANTMLPSVSTPNSIFMSISAQ 405
S+TS M+P V P +++MS++A+
Sbjct: 183 SLTSGGAMMPVVVLPTNVYMSLAAK 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,040,519
Number of Sequences: 59808
Number of extensions: 538383
Number of successful extensions: 1064
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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