Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0490.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21110.1 68416.m02668 phosphoribosylamidoimidazole-succinocar...    30   1.4  
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ...    29   3.3  
At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containi...    28   5.7  
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    27   10.0 

>At3g21110.1 68416.m02668
           phosphoribosylamidoimidazole-succinocarboxamide synthase
           / SAICAR synthetase (PUR7) identical to
           phosphoribosylamidoimidazole-succinocarboxamide
           synthase, chloroplast [precursor] SP:P38025 from
           [Arabidopsis thaliana]
          Length = 411

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 80  AFVKIASETAFLSKKCEMIPIEWVTRRLATGS 175
           A V        ++KKC + PIE+V R   TGS
Sbjct: 167 AIVSSPDRNVVIAKKCSVFPIEFVVRGYVTGS 198



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +1

Query: 256 NHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEF 435
           +HD   S  +I+   F      + + E D      + +FE  +         L+D K EF
Sbjct: 242 DHDVPISPNEIVEGGF------MTQAEFDEASMKALSLFEFGQGVAKKHGLILVDTKYEF 295

Query: 436 GVDTEGSIVLADVI 477
           G  ++GSI+L D I
Sbjct: 296 GRSSDGSILLIDEI 309


>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 695

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -2

Query: 525 PLIFYHGSHNLQGVRIDDIRQYNATFCIDSEFY---FHVNKCAVTQSP 391
           PL   H SH    +R+  +  +   FC ++  Y   +H   C ++ SP
Sbjct: 187 PLEIKHPSHPFHSLRLYGLPTFQKCFCCETSLYDMFYHCATCDLSMSP 234


>At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 738

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 409 ALIDMKIEFGVDTEGSIVLADVIDSDSLEIVASVI 513
           AL+DM ++FG   E  +VL  V + D + I A ++
Sbjct: 206 ALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIV 240


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 743 RSTSRPKFHGAAFRLFSDNVPW 678
           R   +P+ + AAFR++  N+PW
Sbjct: 195 RPERQPRVYDAAFRIYVGNLPW 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,683
Number of Sequences: 28952
Number of extensions: 369745
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)