Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0489.Seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   1.9  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   4.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.9  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   5.9  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   7.9  

>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 550 AENVAGKPR-TQGRSQERGNNQPIWKAAGTTHFKGNGRTVVP 672
           +EN+  + + T     E+ + +P+W    T  F GN R ++P
Sbjct: 30  SENIDSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIP 71


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 612 LVVTAFLAPALGPGLPSDVLG*LQSGNSP 526
           L+ TA L P+L  GLPS  +  LQ G  P
Sbjct: 14  LLFTAALLPSLTSGLPSGNVRILQKGMEP 42


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 624 LPNRLVVTAFLAPALGPGLPSDV 556
           +P  L+V+  LA  L PGLPS V
Sbjct: 56  IPCSLLVSRALAECLSPGLPSGV 78


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 DIGQVLKAARLLCKPPQQVDFEDEQEMRF 406
           ++G+V ++  L+C  PQ  DF D Q + F
Sbjct: 349 EVGEVEQS--LVCNEPQSTDFNDIQRLLF 375


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 257 VPAKNPHAPPPVSVKTTGPVWD 322
           +P  +P  P  +  +T GP+WD
Sbjct: 671 IPRAHPQLPKNLLSQTAGPLWD 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,375
Number of Sequences: 5004
Number of extensions: 60079
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)