Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0489.Seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)             30   1.5  
SB_13133| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.3  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.3  
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)                 28   8.3  
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)
          Length = 246

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 362 PPQQVDFED-EQEMRFVYSVIYDVFR 436
           PP +VDF++ E+  R VYSVIY V R
Sbjct: 5   PPVKVDFKERERTKRIVYSVIYGVGR 30


>SB_13133| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 395

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 313 WAGSFNGNRWWCMRILRRHQKL 248
           W G  NG   WC R+ RR + L
Sbjct: 341 WKGRLNGGAAWCARVRRRGEWL 362


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 313  WAGSFNGNRWWCMRILRRHQKL 248
            W G  NG   WC R+ RR + L
Sbjct: 4997 WKGRLNGGAAWCARVRRRGEWL 5018


>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
          Length = 1502

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 511 FPVYCGVSQPGNSNIVHGLVPRHIISENVINNRINETH 398
           F   C V+   + + +HG+   H + +N+ N  I  TH
Sbjct: 316 FDALCSVNSSSDDHAIHGISLDHHLYDNLSNRWIPTTH 353


>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 566 PATFSANSNQXIAQTYVTVSRVLWGKSAR 480
           PAT + N+N  + Q+  T+  VLWG + R
Sbjct: 40  PATNTLNTNLVLLQSPATLVDVLWGPATR 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,857,843
Number of Sequences: 59808
Number of extensions: 469044
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)