Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0489.Seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    29   4.2  

>Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical
           protein F13D12.3 protein.
          Length = 245

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 437 YNVSWNQA---MDDIGVSWLTYPTVHGKPSHKFGLXPDWS*PRTSLGSPGPRAGAKNAVT 607
           Y  +WNQ     D  G     Y + +G+PS      P +S P++S G P P     +  +
Sbjct: 53  YQNNWNQQNQNWDQYGNRGSQYGSSYGRPSSYGPPQPSYSPPKSSYGRPEPTYSPYSRPS 112

Query: 608 TSLFGRP 628
           +S +GRP
Sbjct: 113 SS-YGRP 118


>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1

Query: 478 FLADLPHSTRETVT*VWAIX*LELAENVAGKPRTQGRSQERGNNQPIWKAAGTTHFKGNG 657
           FL   PH T+   T VW        EN+  K RT  +  +R  + PIW   G++  +  G
Sbjct: 20  FLGLRPHPTKIQATYVWIDG---TGENLRSKTRTFDKLPKRIEDYPIWNYDGSSTGQAKG 76

Query: 658 R 660
           R
Sbjct: 77  R 77


>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 3   NQKNRFKIFSNYMKK*INKNTRFIKLFLLSVRMHRSHASKNQINNMRPMILEDRTAF 173
           N   RFK F   + +  N+N   +K+ L  +    SH+S+N++      I+   T F
Sbjct: 710 NATTRFKKFEELLSRLPNENRETLKMLLRHLNRVASHSSQNRMQQHNLAIVFGPTLF 766


>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 537 LIGVSRERRWEAQDPGQEPRTR*QPAYLEGRWDNPF*GKWEN 662
           L G    + W+ Q P  E   + +P  L+G+   PF GK+ +
Sbjct: 854 LSGAESLKNWDGQSPPIEKHQKGKPILLQGQKKMPFFGKYRD 895


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 641 WVVPAAFQIGWLLPRSWLLPWVLGFPATFSANSNQXIAQTYVTV 510
           W++   + +G L     LLP++ GFP    ANS+  I    V V
Sbjct: 61  WIILFDYSLGILTIPVLLLPYLAGFPVGLLANSDVPIILQVVWV 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,980
Number of Sequences: 27780
Number of extensions: 358253
Number of successful extensions: 964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)