Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0489.Seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58940.1 68416.m06568 F-box family protein contains F-box dom...    30   1.3  
At5g37950.1 68418.m04571 hypothetical protein                          29   3.9  
At2g02280.1 68415.m00166 hypothetical protein low similarity to ...    29   3.9  
At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containi...    27   8.9  

>At3g58940.1 68416.m06568 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 618

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = +2

Query: 317 WDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRYNVSWNQAMDDIGVSWLTYP 496
           WDIG  L   + L      + F + ++    + V+ +V   N+ W +  + +  + LT  
Sbjct: 160 WDIGASLPNLKSLNIDSDLIFFGEMEKFLSSFPVLEEVHMANMEWRELDETMSSASLTKL 219

Query: 497 TVHGKPSHKF 526
           ++HG    +F
Sbjct: 220 SIHGTGVEEF 229


>At5g37950.1 68418.m04571 hypothetical protein
          Length = 351

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 272 PHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRY 439
           P + P   +KT GP+W I ++ K   +  K         +QE   +  VIYD F Y
Sbjct: 40  PESLPASDLKTLGPIWFIIKLNKECEISFKKCLGQFLLQQQEE--IACVIYDEFMY 93


>At2g02280.1 68415.m00166 hypothetical protein low similarity to
           SKP1 interacting partner 3 [Arabidopsis thaliana]
           GI:10716951
          Length = 144

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 498 QYTGNRHISLGYXLIGVSRERRWEAQDPGQE 590
           ++ G +HI +G+   G  + +RWE +D G +
Sbjct: 23  RFHGFKHIGVGFIGHGTPKAKRWERKDLGND 53


>At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 871

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 351 FSASHHSKSISRTNKKCVSFILLFMTFSDIMCLGTRPWTIL 473
           FS  H + S+     KC + +L  M F DI       WT++
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVM 571


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,348,165
Number of Sequences: 28952
Number of extensions: 329040
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)