Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0487.Seq
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252... 29 4.7
02_05_0499 - 29534462-29535315,29535871-29537221 29 4.7
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 28 6.2
12_02_0664 - 21659497-21659547,21659750-21659860,21659971-216600... 28 8.1
11_01_0126 + 1021224-1021256,1021717-1022486,1022582-1022667,102... 28 8.1
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 28 8.1
05_04_0053 + 17520202-17520984 28 8.1
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644... 28 8.1
>12_02_1071 +
25824311-25824460,25824774-25824857,25825168-25825246,
25825334-25825428,25825940-25826067,25826160-25826393,
25826509-25826683,25826716-25826748,25827292-25827375,
25827929-25828169,25828275-25828453,25828800-25828873,
25830800-25830950,25831178-25831252,25831748-25831778,
25832107-25832339
Length = 681
Score = 28.7 bits (61), Expect = 4.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 573 NEPCHDDANNCPGY 614
+E CH+D N CPG+
Sbjct: 279 SEECHEDTNTCPGF 292
>02_05_0499 - 29534462-29535315,29535871-29537221
Length = 734
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 603 NCWRHHGKVRFPAS*RKSGSDVALLTLRVGYATDKHMFGQPSFA 472
NC RH V+ R++G + + + D+H+FG+P A
Sbjct: 439 NCLRHRNLVKIVGWCRQNGRLLLVYDYMPNGSLDRHIFGEPGAA 482
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 94 GMKLNGMG*DGRTMYVIPFSMGPVGSPLSKIGVEITDSPY 213
G + G G T PF+ P GSP++ G + +SP+
Sbjct: 25 GAQTGGFG-QANTTTTNPFAPKPFGSPITAFGAQTGNSPF 63
>12_02_0664 -
21659497-21659547,21659750-21659860,21659971-21660039,
21660442-21660513,21660669-21660749,21661256-21661348,
21661581-21661733,21661846-21661897,21662033-21662218,
21662830-21662949,21663059-21663297
Length = 408
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 189 RRNHGFALRGLFYASHD*NWSEVLEILRQDEQF 287
R H F RGLF+A D N E+L++ + E+F
Sbjct: 65 RPPHRFLRRGLFFAHRDLN--EILDLYEKGEKF 95
>11_01_0126 +
1021224-1021256,1021717-1022486,1022582-1022667,
1024240-1024316,1025095-1025190,1025861-1026566,
1026732-1026775
Length = 603
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 687 G*WPGIRRPCRTSSRLCRPPRNLLCTRGNCWR 592
G W RRP + + R P L+C G WR
Sbjct: 311 GIWIACRRPEYSKTGGARVPVRLICRHGTAWR 342
>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 133 MY-VIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAKF*KFYVKTSSSFVVFTQS 309
MY +P+++ V + + V+ +VY+M AKF F+ + SF+ FT
Sbjct: 954 MYSAMPYAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFFVSYFSFLYFTYY 1013
Query: 310 APVALRVGP 336
+ + + P
Sbjct: 1014 GMMTVAISP 1022
>05_04_0053 + 17520202-17520984
Length = 260
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 431 LAQQTIAAVSTAVAYDLVLSRLVEYDGVLRVAGPTRS 321
++ T AA++T V+Y +V R+V V V+GP RS
Sbjct: 183 VSPDTAAALATDVSYGVVALRVVVLGRVRFVSGPFRS 219
>05_03_0449 -
14161812-14162902,14163121-14163153,14164248-14164457,
14166348-14167011,14167129-14167287,14167449-14167563,
14167672-14167867,14167965-14168286,14168695-14168865,
14169486-14169495,14169932-14170285,14172429-14172553
Length = 1149
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -1
Query: 697 PFSGLMARNTPSLSNFIQAMSSPTQSTLYPGQLLASSWQGSFSRKLKEKRQRCSASYLEG 518
P+S LM +P + M +P S +L + GS KL + C AS L G
Sbjct: 369 PWSALM-EGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRG 427
Query: 517 W 515
W
Sbjct: 428 W 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,286,154
Number of Sequences: 37544
Number of extensions: 417758
Number of successful extensions: 1181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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