Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0487.Seq
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    65   5e-13
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.1  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   3.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.5  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 65.3 bits (152), Expect = 5e-13
 Identities = 31/39 (79%), Positives = 33/39 (84%)
 Frame = +1

Query: 502 IRRITNPQGKKRYIAAAFPSACGKTNLAMMTPTIAPGTK 618
           I  ITNP+GKKRYI AAFPSACGKTNLAMM PT+ PG K
Sbjct: 1   ILAITNPKGKKRYITAAFPSACGKTNLAMMKPTL-PGYK 38



 Score = 61.7 bits (143), Expect = 6e-12
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +3

Query: 606 PGYKVDCVGDDIAWMKFDKDGVFRAINPE 692
           PGYK++CVGDDIAWMKFDK+G  RAINPE
Sbjct: 35  PGYKIECVGDDIAWMKFDKEGRLRAINPE 63


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 342 GRRANPECHRSRLREDNERTARLDVEFLELR 250
           G+  +PE  R R     E+ ARL  EF E R
Sbjct: 13  GKNGSPEEKRPRTAFSAEQLARLKREFAENR 43


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 649 IQAMSSPTQSTLYPGQLLAS 590
           I AMS  ++  L PG+LL+S
Sbjct: 901 IMAMSESSKKVLSPGELLSS 920


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 342 GRRANPECHRSRLREDNERTARLDVEFLELR 250
           G    PE  R R     E+ ARL  EF E R
Sbjct: 13  GNGGTPEEKRPRTAFSGEQLARLKREFAENR 43


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 123 WTHNVRDTIL 152
           WTHNV D +L
Sbjct: 163 WTHNVLDMVL 172


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 297 LHAVGSGGTPGWPCDPKNTII 359
           LHA+ SG     P +PK+T +
Sbjct: 408 LHALTSGKCEHRPFEPKSTAV 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,977
Number of Sequences: 438
Number of extensions: 3755
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)