Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0487.Seq
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16340.1 68416.m02066 ABC transporter family protein similar ...    29   3.9  
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ...    28   5.1  
At4g23760.1 68417.m03418 expressed protein                             28   5.1  
At3g25790.1 68416.m03210 myb family transcription factor contain...    28   5.1  
At1g48430.1 68414.m05414 dihydroxyacetone kinase family protein ...    28   5.1  
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain...    27   9.0  
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain...    27   9.0  
At2g01770.1 68415.m00107 integral membrane family protein contai...    27   9.0  
At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR ...    27   9.0  
At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR ...    27   9.0  
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    27   9.0  

>At3g16340.1 68416.m02066 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1416

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 133  MY-VIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAKF*KFYVKTSSSFVVFTQS 309
            MY  +P+++  V   +  + ++ T    ++Y+M       AKF  FY  +  SF+ FT  
Sbjct: 1231 MYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYY 1290

Query: 310  APVALRVGP 336
              + + + P
Sbjct: 1291 GMMTVALTP 1299


>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
           protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
          Length = 947

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 364 WSMMVFLGSQGQPGVPPEPTA*RQRTNCS 278
           W  +VFL SQ  P  PP   A R +  C+
Sbjct: 265 WGKVVFLPSQALPAPPPGHMAIRSKEGCN 293


>At4g23760.1 68417.m03418 expressed protein 
          Length = 187

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 209 GESVISTPIFERGDPTGPIENGITYIVRPSHPI 111
           GE+  ST +  RG PT  +  G+++  R   PI
Sbjct: 130 GETEYSTNLRPRGSPTSQLRRGVSFRSREMRPI 162


>At3g25790.1 68416.m03210 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 357

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -1

Query: 664 SLSNFIQAMSSPTQSTLYPGQL--LASSW--QGSFSRKLKEKRQRCS 536
           S +N + A++S   + +Y   +  L S W    +F RK+ E R RCS
Sbjct: 284 STANAVNAVASGETTGIYGPMVSSLPSEWPRHSNFGRKISEDRSRCS 330


>At1g48430.1 68414.m05414 dihydroxyacetone kinase family protein
           similar to dihydroxyacetone kinases; contains Pfam
           profiles PF02733:  DAK1 domain, PF02734: DAK2 domain
          Length = 593

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 610 PGQLLASSWQGSFSRKLKEKRQR 542
           PG + A++W  + +R +KE+RQR
Sbjct: 570 PGAMAAAAWYSAAARAVKEQRQR 592


>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 123 WTHNVRDTILDGSCGISSLEDRRRNHGFALRGLFYASHD*NWSEVLEILRQDEQFV 290
           W+H  + TI      +S+ + ++  H   L   +   HD  W + +E+ +  E F+
Sbjct: 129 WSHFAQFTI-----AVSNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKEGFI 179


>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 123 WTHNVRDTILDGSCGISSLEDRRRNHGFALRGLFYASHD*NWSEVLEILRQDEQFV 290
           W+H  + TI      +S+ + ++  H   L   +   HD  W + +E+ +  E F+
Sbjct: 129 WSHFAQFTI-----AVSNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKEGFI 179


>At2g01770.1 68415.m00107 integral membrane family protein contains
           integral membrane protein domain, Pfam:PF01988
          Length = 250

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 659 VELHPGYVVPHAIYFVPGAIVGVIMARFVFPQAEG 555
           + L P  ++PHA+  V  ++V  + A F+F  A+G
Sbjct: 182 IPLLPYMLIPHAMDAVVASVVITLFALFIFGYAKG 216


>At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 537 LHRCRFSFSLRENEPCHDDANNCPGYKVDCVGDDIAWMKF 656
           +++C+ +F+ R  E C +  ++ P  +V+C+  + AW  F
Sbjct: 282 VNKCKVAFTTRSREVCGEMGDHKP-MQVNCLEPEDAWELF 320


>At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 537 LHRCRFSFSLRENEPCHDDANNCPGYKVDCVGDDIAWMKF 656
           +++C+ +F+ R  E C +  ++ P  +V+C+  + AW  F
Sbjct: 280 VNKCKVAFTTRSREVCGEMGDHKP-MQVNCLEPEDAWELF 318


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
 Frame = -2

Query: 336 RANPECHRSRLREDNERTARLDVEFLEL-----RSNSSHDSHRINHVRRIRDFYADLRER 172
           R + + HR R RE +E+   LD +         R  S      + H RR R       ER
Sbjct: 102 RHHRDRHRDRSRERSEKRDDLDDDHHRRSRDRDRRRSRDRDREVRHRRRSRSRSRSRSER 161

Query: 171 RSHRTHR 151
           RS   HR
Sbjct: 162 RSRSEHR 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,934,911
Number of Sequences: 28952
Number of extensions: 309941
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)