Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0486.Seq
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     29   2.5  
01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942...    29   2.5  
05_04_0286 + 19833114-19834053,19834149-19834165                       29   4.4  
11_01_0695 + 5730932-5731198                                           28   5.9  
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052...    28   5.9  

>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 303 CRTTAGSCYGRTAASCRCCGCSWPAFLAVAAISISP 410
           C  T  + Y  +   CR C C  PA  A A  + +P
Sbjct: 722 CCVTFSAFYNESVIPCRTCACGCPASPAAACSTTAP 757


>01_06_0582 +
           30392297-30392677,30393786-30394039,30394175-30394298,
           30394484-30394588,30395913-30396035
          Length = 328

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 258 KIKLGSVLSTACRRGCRTTAGSCYGRTAASCRC 356
           KIK    L  A +RG R   GS  G +AA C C
Sbjct: 135 KIKQKEALGVAEKRGGRRGTGSVIGSSAAGCVC 167


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 300 GCRTTAGSCYGRTAASCRCCGCSWPAFLAV 389
           G R  +G+ YG  AA   CC  SW A  AV
Sbjct: 179 GGRRPSGAAYG-AAAPPECCAVSWDAIRAV 207


>11_01_0695 + 5730932-5731198
          Length = 88

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 264 KLGSVLSTACRRGCRTTAGSCYGRTAASCRCCGCSWP 374
           +L  V+S   +  C    G C  R    C  CGC +P
Sbjct: 41  RLMDVVSAESKLACLPAGGFCMFRPMDCCGNCGCLYP 77


>04_04_0917 -
           29404341-29404519,29404610-29404744,29404898-29405225,
           29405313-29405532,29405653-29406647,29407233-29407493,
           29407534-29407872,29409309-29409497
          Length = 881

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 586 DDCCESRDDVVKGEIEEDRMEKAKW*CEGGNG 491
           +D  E R D+ K   E+D+ E   W  + GNG
Sbjct: 439 EDVLEKRKDIEKETAEKDQGENVPWRMQFGNG 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,412,514
Number of Sequences: 37544
Number of extensions: 196347
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)